Pairwise Alignments

Query, 186 a.a., sigma-70 family RNA polymerase sigma factor from Dyella japonica UNC79MFTsu3.2

Subject, 172 a.a., RNA polymerase subunit sigma-24 from Pseudomonas simiae WCS417

 Score = 70.1 bits (170), Expect = 2e-17
 Identities = 51/160 (31%), Positives = 82/160 (51%), Gaps = 8/160 (5%)

Query: 20  RFESFVRDQRHALLAFLRRRVSSEEDAQDIAQESLVRLIRYREHAP-ESWSSLLYRIAIN 78
           RF      QR  LL  L+R V++   A+D+ QE+ +R+ R     P +     +Y+ A N
Sbjct: 5   RFNHVFLTQRVMLLRTLQRMVNNHSTAEDLLQETYLRVTRALSERPIDHLEPFVYQTARN 64

Query: 79  ALND--RARRAQSHYQHDHISLD--EHAHGLVSNDQDHDQRIANQQELARLQQALLGLPA 134
              D  RARR Q+    +++ LD  +     +S  +D  Q    +Q L  L  +L  L A
Sbjct: 65  LALDHLRARRIQARTLQENVPLDVLQSVAAPISTPEDATQA---EQMLEALSVSLGQLSA 121

Query: 135 RCREIYLLNRIEGMSYPEIARHCGISVKAVEKNISRALAL 174
           R + I++L+R+ G SY EIA   G+S+  V+K +   +A+
Sbjct: 122 RQQRIFILSRLHGCSYQEIADQLGVSLSTVQKELKLIMAI 161