Pairwise Alignments

Query, 679 a.a., methyl-accepting chemotaxis protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 712 a.a., chemotaxis protein from Pseudomonas simiae WCS417

 Score =  213 bits (543), Expect = 2e-59
 Identities = 167/547 (30%), Positives = 268/547 (48%), Gaps = 71/547 (12%)

Query: 158 GNPIFVVAA---PVRVSGRIAGVVYSAVK---LQGLSEGAVSRVKVGKRGYAFIADAKGR 211
           GN + ++A+   P+ + G   G+V + +    +Q +   A  ++  G    A I+ + GR
Sbjct: 209 GNAMVMLASFIEPIMIDGAFQGIVGADLSVNFIQDMLTSADQKLYNGAGEMALIS-SNGR 267

Query: 212 VLAHPRRDLIMKLDLSTMEWGREMLGKD---AGVVRYLFEGQ----EKIVAFE-REPVTR 263
           ++A+ +    +    S +    E+   +   AG VRY  + +    E  + F   +   R
Sbjct: 268 LVAYTKDASKLGEKASDLLDSNELTNLNQLKAGEVRYDIDKEHGHIELFLPFTIGQADAR 327

Query: 264 WMV-------GVTAEQSDIFDSIVSIRNRSALAAGVVLLCIVGVGVFVV----RGISQAL 312
           W +        V A+   +   + + R        +  L I G+G+ V+     GI++ L
Sbjct: 328 WTLMLQLPLSAVMADSQKLQSDLEAQRKTDIFGMTIAGLLIAGIGLLVIWLVGHGIARPL 387

Query: 313 GEGVRFATDVAAG--DLSRDINLNRNDELGQLASALTTMVKRLREMIATAEQKTSEAEAQ 370
            + V    D+A G  DL+R +  +R DELG +A+   T + +L+ MI             
Sbjct: 388 KQMVAMLNDIAQGEGDLTRRLTSDRADELGAIANGFNTFLIKLQGMI------------- 434

Query: 371 SLAAQEATRVAEEARRQAEGARREGLLDAAGRLEGIVMRVTSASEQLAAQVEQSSRGADL 430
                  T+V                          V +V+ +SE  A    ++++G   
Sbjct: 435 -------TQVVSS-----------------------VQKVSDSSEHTADIAIRTNQGVHK 464

Query: 431 QRERSAEAATAMEEMTATVIEVARNASEASESADKARQQATDGAGVVLSMVEAIGTVDAQ 490
           Q     + ATA+ EMTAT  +VARNA++A+++A  A Q A+ G  +V     +IG +  +
Sbjct: 465 QMVEIDQVATAVHEMTATAQDVARNATQAAQAASHADQAASQGMRIVRDTSTSIGALAEE 524

Query: 491 TGELRGSLGTLGERAEGIGQIMTVISDIADQTNLLALNAAIEAARAGDAGRGFAVVADEV 550
            G+    + TL + +E I  I+T I  IA+QTNLLALNAAIEAARAG+ GRGFAVVADEV
Sbjct: 525 IGKAVSVVQTLAKDSENINAILTAIRGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEV 584

Query: 551 RKLAEKTMNATREVGEAVRAIQNGTRDSIAGMEQASMSVGRSNELAGLAGAALQRIVTFV 610
           R LA+KT  AT E+   ++ +Q GTRD +  ME +      S + A  A  AL+ I   V
Sbjct: 585 RNLAQKTQKATEEIQTMIQQLQQGTRDVVRVMEDSQSRTDESVQHAAKAAEALETITQAV 644

Query: 611 EASADQVRSIATASEEQSAASEQISRGTEEVNRIAAETADAMRQSAQAVTELAAMAQELQ 670
               D    IA+A+EEQSA +E I+R    + ++A E A    +S+ A  +L  +A++ +
Sbjct: 645 SVINDMNTQIASAAEEQSAVAEDINRNVINIGQVANEVAGGADESSAASADLTKLAEQQR 704

Query: 671 QLIERLK 677
           +LI + K
Sbjct: 705 RLINQFK 711