Pairwise Alignments

Query, 500 a.a., transcriptional regulator, GntR family (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 468 a.a., Uncharacterized HTH-type transcriptional regulator YdcR from Escherichia coli ECRC99

 Score =  281 bits (720), Expect = 3e-80
 Identities = 164/466 (35%), Positives = 249/466 (53%), Gaps = 10/466 (2%)

Query: 15  YHQVERHVTRMIEDGRWRTGDRLPSLRQIATSMGVSIATVVHAYTELERKGVIEARPRSG 74
           Y Q+   +   I  G W+ GDRLPSLR      G+S  TV HAY  LE +G I ARP+SG
Sbjct: 4   YQQLAEQLREQIASGIWQPGDRLPSLRDQVALSGMSFMTVSHAYQLLESQGYIIARPQSG 63

Query: 75  HYVGAAISALPT----PAAREQALAGPRVVNRSRLISTVLEAVGNHELVPFGVLCPDTSL 130
           +YV      +P     P  R++A      V+ +  I  +L+A  +  +VPF    PD  L
Sbjct: 64  YYVAPQAIKMPKVPVIPVTRDEA------VDINTYIFDMLQASRDPSVVPFASAFPDPRL 117

Query: 131 LPLKALVRIMGETMRSAPQVATGYETVQGNAELRRRIAWRMGECGMDVSAEGLVITTGAV 190
            PL+ L R + +  ++A  ++       GNAELR+ IA R    G+ +S + +VIT GA+
Sbjct: 118 FPLQQLNRSLAQVSKTATAMSVIENLPPGNAELRQAIARRYALQGITISPDEIVITAGAL 177

Query: 191 EALYIALRALTRPGDIVVIQSPTYYCFLQLLETLGLRAIEAPSSPEKGIDPEAVRHIVDR 250
           EAL ++L+A+T PGD V++++P +Y  LQ LE L L+A+   +  ++GID +A+   +  
Sbjct: 178 EALNLSLQAVTEPGDWVIVENPCFYGALQALERLRLKALSVATDVKEGIDLQALELALQE 237

Query: 251 HRVACCIFSPNFNNPDGSLTPDDAKREILDILAPRGIHVIEDDVAADLHYGPVRPSTFSQ 310
           + V  C    N  NP G       K +++ +L    + +IEDDV ++L++G  +P     
Sbjct: 238 YPVKACWLMTNSQNPLGFTLTPQKKAQLVALLNQYNVTLIEDDVYSELYFGREKPLPAKA 297

Query: 311 YDRHGLVTLCSSFSKTVAPGFRVGWMAPGRIFDKAMEVKATTNVCCPTPTQMALARYLEQ 370
           +DRH  V  CSSFSK + PGFR+GW+A G+   K   ++  + +   +P Q+AL  YL  
Sbjct: 298 WDRHDGVLHCSSFSKCLVPGFRIGWVAAGKHARKIQRLQLMSTLSTSSPMQLALVDYLST 357

Query: 371 GLLQRHLRRLRTALVRQMEAMRQTIACSFPEGTSATRPLGGGVLWVRLPEGTDGTELFYR 430
                HLRRLR  L  + +   Q +    P          G  LW+ LPE  D  EL   
Sbjct: 358 RRYDAHLRRLRRQLAERKQRAWQALLRYLPAEVKIHHNDSGYFLWLELPEPLDAGELSLA 417

Query: 431 ARDAGIAIAPGSIFSTQDSYTNYVRLGCNGVWDDRMAQGLRTLGEL 476
           A    I+IAPG +FST ++++ + R     +W +R  Q ++ LG+L
Sbjct: 418 ALTHHISIAPGKMFSTGENWSRFFRFNTAWLWGEREEQAVKQLGKL 463