Pairwise Alignments

Query, 500 a.a., transcriptional regulator, GntR family (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 468 a.a., Uncharacterized HTH-type transcriptional regulator YdcR from Escherichia coli ECOR38

 Score =  278 bits (711), Expect = 3e-79
 Identities = 162/462 (35%), Positives = 245/462 (53%), Gaps = 2/462 (0%)

Query: 15  YHQVERHVTRMIEDGRWRTGDRLPSLRQIATSMGVSIATVVHAYTELERKGVIEARPRSG 74
           Y Q+   +   I  G W+ GDRLPSLR      G+S  TV HAY  LE +G I ARP+SG
Sbjct: 4   YQQLAEQLREQIASGIWQPGDRLPSLRDQVALSGMSFMTVSHAYQLLESQGYIIARPQSG 63

Query: 75  HYVGAAISALPTPAAREQALAGPRVVNRSRLISTVLEAVGNHELVPFGVLCPDTSLLPLK 134
           +YV  A  A+  P A    +     V+ +  I  +L+A  +  +VPF    PD  L PL+
Sbjct: 64  YYV--APQAIKMPKAPVIPVTRDEAVDINTYIFDMLQASRDPSVVPFASAFPDPRLFPLQ 121

Query: 135 ALVRIMGETMRSAPQVATGYETVQGNAELRRRIAWRMGECGMDVSAEGLVITTGAVEALY 194
            L R + +  ++A  ++       GNAELR+ IA R    G+ +S + +VIT GA+EAL 
Sbjct: 122 QLNRSLAQVSKTATAMSVIENLPPGNAELRQAIARRYALQGITISPDEIVITAGALEALN 181

Query: 195 IALRALTRPGDIVVIQSPTYYCFLQLLETLGLRAIEAPSSPEKGIDPEAVRHIVDRHRVA 254
           ++L+ +T PGD V++++P +Y  LQ LE L L+A+   +  ++GID +A+   +  + V 
Sbjct: 182 LSLQVVTEPGDWVIVENPCFYGALQALERLRLKALSVATDVKEGIDLQALELALQEYPVK 241

Query: 255 CCIFSPNFNNPDGSLTPDDAKREILDILAPRGIHVIEDDVAADLHYGPVRPSTFSQYDRH 314
            C    N  NP G       K +++ +L    + +IEDDV ++L++G  +P     +D H
Sbjct: 242 ACWLMTNSQNPLGFTLTPQKKAQLVALLNQYNVTLIEDDVYSELYFGREKPLPAKAWDHH 301

Query: 315 GLVTLCSSFSKTVAPGFRVGWMAPGRIFDKAMEVKATTNVCCPTPTQMALARYLEQGLLQ 374
             V  CSSFSK + PGFR+GW+A G+   K   ++  + +   +P Q+AL  YL      
Sbjct: 302 DGVLHCSSFSKCLVPGFRIGWVAAGKHARKIQRLQLMSTLSTSSPMQLALVDYLSTRRYD 361

Query: 375 RHLRRLRTALVRQMEAMRQTIACSFPEGTSATRPLGGGVLWVRLPEGTDGTELFYRARDA 434
            HLRRLR  L  + +   Q +    P          G  LW+ LPE  D  EL   A   
Sbjct: 362 AHLRRLRRQLAERKQRAWQALLRYLPAEVKIHHNDSGYFLWLELPEPLDAGELSLEALTH 421

Query: 435 GIAIAPGSIFSTQDSYTNYVRLGCNGVWDDRMAQGLRTLGEL 476
            I+IAPG +FST ++++ + R      W +R  Q ++ LG+L
Sbjct: 422 HISIAPGKMFSTGENWSRFFRFNTAWQWGEREEQAVKQLGKL 463