Pairwise Alignments

Query, 476 a.a., sigma-54 dependent transcriptional regulator/response regulator (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 465 a.a., Fis family transcriptional regulator from Pseudomonas simiae WCS417

 Score =  292 bits (748), Expect = 1e-83
 Identities = 180/482 (37%), Positives = 262/482 (54%), Gaps = 37/482 (7%)

Query: 4   LLIVEDNEDVRRQLRWGLAKEPYDLHLAGSVDEALALQREHAPAVVTLDLGLPPDAEGAS 63
           +L+V+D   +   L   L +    + +AG+   AL +  +    +V  D  +P       
Sbjct: 5   ILVVDDEPKLCDLLASALGQNDVQVFIAGNGLHALKVLEQEDIDLVISDWRMP-----GM 59

Query: 64  EGFRGLAALLDHDPRTKVIVVTGHHDMENALRAIEGGAYDFCQKPADLEMLKVIISRAFF 123
           +G   LA +    P   VIV+T +  ++NA++++  GAYD+  KP D++ L + +++A  
Sbjct: 60  DGPALLAEIKVRYPHVPVIVMTAYSTVKNAVQSMRNGAYDYIAKPFDIDELDITVAKALQ 119

Query: 124 LHGLQGGGAMASASGMASASGGASAPDAVSGAGAGGGKPDDGWQGIVGRCPSMRAVFETV 183
              +    A   A     A                       +  +VG  P+ R V + V
Sbjct: 120 FRDIMRDNARLRAELDEHAQ----------------------FDSLVGDSPAFRKVLQAV 157

Query: 184 AKVAVTGAPVLVTGESGTGKELVARAIHALGPRCTRTFVAINCGAIPDNLLEAEFFGYEK 243
             V  + A +L+TGESGTGKE+VARAIH  G R  + FVA+NC AIP+ LLE+E FG+ K
Sbjct: 158 DSVRDSSATILLTGESGTGKEMVARAIHKHGSRADKPFVAVNCAAIPEGLLESEMFGHRK 217

Query: 244 GAFTGATQRVQGKVEYADGGTLFLDEIGELPANLQVKLLRFLQEKVIQRVGGRKDIAVDA 303
           GAFTGA     G+ + AD GTLFLDE+G++P  LQ K+LR LQE+VI+ VG  ++  VD 
Sbjct: 218 GAFTGAVADRVGRFQQADKGTLFLDEVGDMPLALQAKILRALQERVIEPVGDPRERKVDV 277

Query: 304 RIVAATNRDIQTEIASGRFREDLYYRIGVVPVALPPLRARGDDILLLARHFLESSAGEGT 363
           R++AATN+++   +A+  FREDLYYR+ V P+ LP LR R +DI  LARHF ++ +    
Sbjct: 278 RVIAATNKNLLDAVANKEFREDLYYRLNVFPIPLPSLRERVEDIAPLARHFAQTLSATAG 337

Query: 364 GNIVGFSPAAEQAMLRYAWPGNVRELENKVRRAVIFASGRRIMPDDL-GF---------D 413
             I GFS  A QAM  Y WPGN+REL+N V RA I A+   I   DL G+         D
Sbjct: 338 KRITGFSAEALQAMAAYHWPGNIRELQNCVERATIVAASPVIEDIDLPGYLFASKPNQGD 397

Query: 414 ETPAKAAAPRPEGSLREARNALERDMVLSALDKCGGNIVQASLAIGVSRPTFYDLLRKHG 473
            T   +  P     L  A   +E+  +L+AL +  G    A+  IG+S  +F+  L+K G
Sbjct: 398 VTAILSDGPGIPQDLDAALAEVEKAYILAALQESNGVQAAAAAKIGISERSFWYRLKKLG 457

Query: 474 IE 475
           I+
Sbjct: 458 IQ 459