Pairwise Alignments

Query, 476 a.a., sigma-54 dependent transcriptional regulator/response regulator (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 441 a.a., Sigma-54 dependent transcriptional regulator from Pseudomonas putida KT2440

 Score =  300 bits (767), Expect = 9e-86
 Identities = 167/373 (44%), Positives = 225/373 (60%), Gaps = 30/373 (8%)

Query: 102 YDFCQKPADLEMLKVIISRAFFLHGLQGGGAMASASGMASASGGASAPDAVSGAGAGGGK 161
           +DF   P D+  ++V + RAF +  L+G GA+                           K
Sbjct: 98  FDFHTLPFDVSRVQVTLGRAFGMARLRGKGAV---------------------------K 130

Query: 162 PDDGWQGIVGRCPSMRAVFETVAKVAVTGAPVLVTGESGTGKELVARAIHALGPRCTRTF 221
            D+    ++G    +R + + + K+A T +PVL+ GESGTGKELVAR +H    R  + F
Sbjct: 131 VDEATHELLGESRPIRELRKLLGKLAPTESPVLIRGESGTGKELVARTLHRQSQRSEQPF 190

Query: 222 VAINCGAIPDNLLEAEFFGYEKGAFTGATQRVQGKVEYADGGTLFLDEIGELPANLQVKL 281
           +AINCGAIP++L+++E FG+EKGAFTGA QR  G++E ADGGTLFLDEIG+LP  LQ  L
Sbjct: 191 IAINCGAIPEHLIQSELFGHEKGAFTGAHQRKTGRIEAADGGTLFLDEIGDLPLELQANL 250

Query: 282 LRFLQEKVIQRVGGRKDIAVDARIVAATNRDIQTEIASGRFREDLYYRIGVVPVALPPLR 341
           LRFLQEK I+RVGG + I VD R++AAT+ D++  I  GRFREDLYYR+ V+ V   PLR
Sbjct: 251 LRFLQEKHIERVGGSQPIPVDVRVLAATHVDLERAIEQGRFREDLYYRLNVLQVVTAPLR 310

Query: 342 ARGDDILLLARHFLESSAGEGTGNIVGFSPAAEQAMLRYAWPGNVRELENKVRRAVIFAS 401
            R  D+ +LA HF    + E       FS  A  AM R+ WPGNVREL N+VRR ++ A 
Sbjct: 311 DRHGDLSMLANHFAHFYSVETGRRPRSFSDHALAAMGRHDWPGNVRELANRVRRGLVLAE 370

Query: 402 GRRIMPDDLGFDETPAKAAAPRPEGSLREARNALERDMVLSALDKCGGNIVQASLAIGVS 461
           GR+I   DLG      +    +P G+L E +   ER  +   L++   N+  A+  +G+S
Sbjct: 371 GRQIEAQDLGLQLLDPE---QQPLGTLEEYKQRAERQALCDVLNRHSDNLSVAAKVLGIS 427

Query: 462 RPTFYDLLRKHGI 474
           RPTFY LL KH I
Sbjct: 428 RPTFYRLLHKHQI 440