Pairwise Alignments

Query, 216 a.a., type III secretion system protein, YscR family (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 250 a.a., flagellar biosynthetic protein FliP from Magnetospirillum magneticum AMB-1

 Score =  147 bits (370), Expect = 2e-40
 Identities = 89/212 (41%), Positives = 126/212 (59%), Gaps = 13/212 (6%)

Query: 7   LYFIAGMALLGLAPFFLMMVTSYVKIVVVTSLVRNALGVQQVPPTMVMNGLAIILSIFIM 66
           +  IA   +L +AP  L+MVTS+ + VVV   +R ALG QQ PP  VM  LA+ L+ F+M
Sbjct: 48  IQLIALTTVLSVAPSILVMVTSFTRFVVVLGFLRQALGTQQSPPNTVMVSLAMFLTAFVM 107

Query: 67  APVASGTLDLMQNMKIGPD-PAPREIIALLDKASPPLRGFLERNADDKVVTVFM--STAK 123
           AP    T +      I P      + I   ++A  P   F+ ++   + + +FM  S AK
Sbjct: 108 AP----TFEKAWTDGIAPVMDGHLDEIEGFERAVKPFHAFMSKHVRGQDLKLFMDLSRAK 163

Query: 124 RIWPADQHASISRDNLLILIPSFTISELTRAFQIGFLLYLPFVAIDLVISNILLAMGMMM 183
            +  A+         L  LIP+F ISEL RAF+IGFL++LPF+ ID+VI+++L++MGMMM
Sbjct: 164 EVEKAEDAP------LRALIPAFMISELRRAFEIGFLIFLPFLIIDMVIASVLMSMGMMM 217

Query: 184 VSPMTISLPFKLLLFVTLDGWLKVSQGLLLSY 215
           + P  ISLPFKL+ FV +DGW  V   L+ SY
Sbjct: 218 IPPAMISLPFKLIFFVMVDGWYLVVGSLVQSY 249