Pairwise Alignments

Query, 216 a.a., type III secretion system protein, YscR family (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 241 a.a., flagellar type III secretion system pore protein FliP from Serratia liquefaciens MT49

 Score =  148 bits (373), Expect = 1e-40
 Identities = 88/216 (40%), Positives = 128/216 (59%), Gaps = 19/216 (8%)

Query: 6   PLYFIAGMALLGLAPFFLMMVTSYVKIVVVTSLVRNALGVQQVPPTMVMNGLAIILSIFI 65
           P+  +  +  L   P  L+M+TS+ +I++V  L+RNALG    PP  VM GLA+ L+ FI
Sbjct: 37  PVQTLVLLTSLSFLPAMLLMMTSFTRIIIVLGLLRNALGTPSAPPNQVMLGLALFLTFFI 96

Query: 66  MAPVASGTLDLMQNMKIGPD---PAPREIIAL---LDKASPPLRGFLERNADDKVVTVFM 119
           M+PV           K+  D   P  ++ I+L   LDK S PLR F+ R   +  + ++ 
Sbjct: 97  MSPVFD---------KVYQDAYLPFSQDKISLDIALDKGSQPLREFMLRQTRETDLALYA 147

Query: 120 STAKRIWPADQHASISRDNLLILIPSFTISELTRAFQIGFLLYLPFVAIDLVISNILLAM 179
             A +   A   A   R    IL+P++  SEL  AFQIGF +++PF+ IDLV++++L+A+
Sbjct: 148 KLANQPPLAGPEAVPMR----ILLPAYVTSELKTAFQIGFTVFIPFLIIDLVVASVLMAL 203

Query: 180 GMMMVSPMTISLPFKLLLFVTLDGWLKVSQGLLLSY 215
           GMMMV P TISLPFKL+LFV +DGW  +   L  S+
Sbjct: 204 GMMMVPPATISLPFKLMLFVLVDGWQLLLGSLAQSF 239