Pairwise Alignments

Query, 479 a.a., sigma-54 dependent transcriptional regulator (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 448 a.a., chemotaxis protein CheY from Pseudomonas simiae WCS417

 Score =  262 bits (669), Expect = 2e-74
 Identities = 157/436 (36%), Positives = 238/436 (54%), Gaps = 25/436 (5%)

Query: 30  SRSTAGMKSRLAARAHDIALVDMDILCGGTTTDYETIRQAVHGFRQQHPSVDLIVLARAD 89
           + S A   + +  +  D+  +D+ +   G     + + Q     R Q P + ++++    
Sbjct: 38  ANSAAQADALMQRQVFDLCFLDLRL---GEDNGLDVLAQ----MRIQAPWMRVVIVTAHS 90

Query: 90  AIRQAVDAVRAGAGNYLTYPLHPEEVRLVTQKLHESALVRSELDYLRDRLIQGRSGGDEG 149
           A+  AVDA++AGA +YL  P  P+++RL T K  E   + + L+ L   + Q + G    
Sbjct: 91  AVDTAVDAIQAGAADYLVKPCSPDQLRLATAKQLEVRQLSARLEALEGEVRQPKDG---- 146

Query: 150 IVLDTRSPRMREVYDKIRLVAATRSTVLLTGETGTGKSLIARLIHSHSNRHGKRFISVHC 209
             LD+ SP M  V +  R VA T + +L+ GE+GTGK  +AR IH  S R  K  ++++C
Sbjct: 147 --LDSHSPSMMVVLETARQVAGTDANILILGESGTGKGELARAIHGWSKRSKKSCVTINC 204

Query: 210 GAIPEALVESELFGHEKGAFTGAIRKKPGRFEIAEGGTIFLDEIGTIGPSVQIKLLNVLQ 269
            ++   L+ESELFGH +GAFTGA     GR   A+GGT+FLDEIG    ++Q KLL  +Q
Sbjct: 205 PSLTAELMESELFGHSRGAFTGASESTLGRVNQADGGTLFLDEIGDFPLTLQPKLLRFIQ 264

Query: 270 DRCFQRVGGETVIRPDVRVVAATNEDLSTLCAQGRFRRDLYYRLNVFPIDIPPLRERKED 329
           D+ ++RVG     R DVR++AATN +L  +   GRFR DL YRLNV  + +PPLRER ED
Sbjct: 265 DKEYERVGDPVTRRADVRILAATNLNLEDMVRDGRFREDLLYRLNVITLHLPPLRERSED 324

Query: 330 ILQLAEAFVRRCNPQRSRDIRAIHPDVIDAFMRYDWPGNVRELENIIERACILEGGEVLS 389
           IL LA+ F+ R   + +R  R    +  +A + Y WPGN+REL N++ERA I     +  
Sbjct: 325 ILTLADRFLARFVKEYARPARGFSDEAREALLNYRWPGNIRELRNVVERASI-----ICP 379

Query: 390 PEAFPAEFRGLPHAVRNRALDISLPLEAARRHALDSFEREYLERALATSGGSIKGAAAIA 449
            E       G+     N A  I   L      +LD  E+ ++   LATS  ++  AA   
Sbjct: 380 QEKVEITHLGMAEQPGNNAPRIGAAL------SLDQLEKAHIGAVLATS-DTLDQAARTL 432

Query: 450 GVTTRQIHKLMTRHSL 465
           G+    +++   +++L
Sbjct: 433 GIDASTLYRKRKQYNL 448