Pairwise Alignments

Query, 479 a.a., sigma-54 dependent transcriptional regulator (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 451 a.a., sigma-54 dependent transcriptional regulator/response regulator (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  263 bits (671), Expect = 1e-74
 Identities = 168/454 (37%), Positives = 247/454 (54%), Gaps = 23/454 (5%)

Query: 14  LAVLPRCFTPDIDLELSRSTAGMKSRLAARAHDIALVDMDILCGGTTTDYETIRQAVHGF 73
           LA+L R    ++D   +   A     LA   +D+ L D+ +       D + +    H  
Sbjct: 18  LAILLRKRKYEVDTAANGEEA--MRALAGADYDLVLTDLMM------DDMDGMALLRH-I 68

Query: 74  RQQHPSVDLIVLARADAIRQAVDAVRAGAGNYLTYPLHPEEVRLVTQKLHESALVRSELD 133
           RQ H   ++I++     +  AV A++ GA +YL  P   EE R + QK  E   +  E+ 
Sbjct: 69  RQHHADTEVIMITGYATVETAVLAMQEGAYHYLAKPYRIEEARALVQKALEKRALNQEVH 128

Query: 134 YLRDRLIQGRSGGDEGIVLDTRSPRMREVYDKIRLVAATRSTVLLTGETGTGKSLIARLI 193
            LR++L +        + +   +P + E+   I  VA   ++VL+ GETGTGK L AR++
Sbjct: 129 RLREQLRERSLP----VPILGSAPCIVELKRLIAKVAPAEASVLILGETGTGKELAARMV 184

Query: 194 HSHSNRHGKRFISVHCGAIPEALVESELFGHEKGAFTGAIRKKPGRFEIAEGGTIFLDEI 253
           H  S R  +RF++++CGA  +AL+ESELFGHE+GAF+GA R K G FE AEGGT+FLDE+
Sbjct: 185 HLFSRRSDRRFLAINCGAFNDALLESELFGHEQGAFSGAARLKKGLFEAAEGGTLFLDEV 244

Query: 254 GTIGPSVQIKLLNVLQDRCFQRVGGETVIRPDVRVVAATNEDLSTLCAQGRFRRDLYYRL 313
           G +  ++Q+KLL  LQ+R  +RVGG   I  DVR+VAATN DL      G FR DL+YRL
Sbjct: 245 GEMSLAMQVKLLRTLQERSIRRVGGTVDIPVDVRLVAATNRDLKREAEAGTFRADLFYRL 304

Query: 314 NVFPIDIPPLRERKEDILQLAEAFVRRCNPQRSRDIRAIHPDVIDAFMRYDWPGNVRELE 373
           NV  + +PPL ER+ DI  LA  F  +          AI  D +DA  RY +PGNVREL+
Sbjct: 305 NVVSLRMPPLSERRADIPLLARYFTEKSARDMQVAPPAIGQDALDALARYPFPGNVRELQ 364

Query: 374 NIIERACILEGGEVLSPEAFPAE-FRGLPHAVRNRALDISLPLEAARRHALDSFEREYLE 432
           NI+ERA +L    V+     P + F    H +R          +  +   LD  ER+++ 
Sbjct: 365 NIMERAVVLCSDGVIKAGHLPPDLFEAPDHVMRG---------DERKALTLDDNERDHIM 415

Query: 433 RALATSGGSIKGAAAIAGVTTRQIHKLMTRHSLK 466
             L  +GG+   AA + G+    + + + R  ++
Sbjct: 416 WMLEHAGGNRTLAARLLGIDRASLWRKLKRFGVE 449