Pairwise Alignments

Query, 479 a.a., sigma-54 dependent transcriptional regulator (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 459 a.a., sigma-54 dependent transcriptional regulator/response regulator (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  278 bits (711), Expect = 3e-79
 Identities = 163/417 (39%), Positives = 241/417 (57%), Gaps = 11/417 (2%)

Query: 51  DMDILCGGTTTDYETIRQAVHGFRQQHPSVDLIVLARADAIRQAVDAVRAGAGNYLTYPL 110
           ++D++         T R+ +   ++  P + + ++    +I  AVD ++ GA +Y+T P 
Sbjct: 48  EVDVVITDMKMPRVTGREVLERVKKTWPHIPVCIMTAFGSIEGAVDVMKYGAFDYITKPF 107

Query: 111 HPEEVRLVTQKLHESALVRSELDYLRDRLIQGRSGGDEGIVLDTRSPRMREVYDKIRLVA 170
             +E+ L  Q   E + V  +   LR  L + R G  + I    RS  +REV D +   A
Sbjct: 108 SNDELLLSVQNAAELSRVHRQYRALRANL-EERYGTHQII---GRSKAIREVLDMVDRAA 163

Query: 171 ATRSTVLLTGETGTGKSLIARLIHSHSNRHGKRFISVHCGAIPEALVESELFGHEKGAFT 230
            +RSTVL+TGE+GTGK L+AR IH  S R+   F+SV+C A+   ++ESELFGHEKG+FT
Sbjct: 164 PSRSTVLITGESGTGKELVARAIHFSSPRNSGPFVSVNCMALNPGVLESELFGHEKGSFT 223

Query: 231 GAIRKKPGRFEIAEGGTIFLDEIGTIGPSVQIKLLNVLQDRCFQRVGGETVIRPDVRVVA 290
           GA+  + GRFE A+GGT+FLDEIG + P +Q+KLL VLQ+R F+RVGG   I  D+RVVA
Sbjct: 224 GAMAMRRGRFEQADGGTLFLDEIGELTPELQVKLLRVLQERRFERVGGGDEIEVDIRVVA 283

Query: 291 ATNEDLSTLCAQGRFRRDLYYRLNVFPIDIPPLRERKEDILQLAEAFVRRCNPQRSRDIR 350
           ATN+DL      G FR DLYYRLNV  + +PPLRER+EDI  L   FV +         +
Sbjct: 284 ATNKDLQKEVENGTFREDLYYRLNVVHVALPPLRERREDIPLLVGHFVEKLARDNGMKPK 343

Query: 351 AIHPDVIDAFMRYDWPGNVRELENIIERACILEGGEVLSPEAFPAEFRGLPHAVRNRALD 410
              P+  D    Y+WPGN+R+L+N++ER  +L   + +  +  P E R     +++ A+D
Sbjct: 344 TFTPEAHDYLTGYEWPGNIRQLQNVVERCLVLVASDTVGVDDLPPEIRDEESQLKS-AVD 402

Query: 411 ISLPLEAARRHALDSFEREYLERALATSGGSIKGAAAIAGVTTRQIHKLMTRHSLKK 467
           + LP+       L+  E   + RAL  +      AA + G++     K + ++ LKK
Sbjct: 403 L-LPVRLDLADTLEKIEAALIRRALVRAEFVQVKAAELLGIS-----KSLLQYKLKK 453