Pairwise Alignments

Query, 479 a.a., sigma-54 dependent transcriptional regulator (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 472 a.a., sigma-54 dependent transcriptional regulator/response regulator (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  276 bits (706), Expect = 1e-78
 Identities = 178/447 (39%), Positives = 250/447 (55%), Gaps = 31/447 (6%)

Query: 34  AGMKSRLAARAHDIALVDMDILCGGTTTDYETIRQAVHGFRQQHPSVDLIVLARADAIRQ 93
           AG+++ LA+   D+  V +DI   G   D  T+ + +H      PS+ +I+++    I  
Sbjct: 37  AGLRT-LASDTPDV--VFLDIWMPGM--DGLTVLEHIHAAA---PSLPVIMISGHGTIET 88

Query: 94  AVDAVRAGAGNYLTYPLHPEEVRLVTQKLHESALVRSELDYLRDRLIQGRSGGDEGIVLD 153
           AV A++ GA +++  PL  E+V +  ++  E   +R E   LR  L  G S  DE   L 
Sbjct: 89  AVAAIKKGAHDFIEKPLSLEKVVIAAERALEMRELRRENQALRSSLGAG-SKADE---LI 144

Query: 154 TRSPRMREVYDKIRLVAATRSTVLLTGETGTGKSLIARLIHSHSNRHGKRFISVHCGAIP 213
             S  MR + ++I  VA T + VL+TGE GTGK L AR +H+ S R  +  ++V+C AIP
Sbjct: 145 GESAPMRRIREQIARVAPTDAWVLITGENGTGKELAARAVHAGSQRATRPLVAVNCAAIP 204

Query: 214 EALVESELFGHEKGAFTGAIRKKPGRFEIAEGGTIFLDEIGTIGPSVQIKLLNVLQDRCF 273
           E L+ESELFGHEKGAFTGA   + G+FE+A  GT+FLDEIG +    Q K+L +LQ++ F
Sbjct: 205 EELIESELFGHEKGAFTGAESARTGKFEMAHRGTLFLDEIGDMSLKTQAKILRILQEQSF 264

Query: 274 QRVGGETVIRPDVRVVAATNEDLSTLCAQGRFRRDLYYRLNVFPIDIPPLRERKEDILQL 333
           ++VGG   IR DVRVVAATN++L    AQG FR DLYYRL VFP+ +P LRER +DIL+L
Sbjct: 265 EKVGGTRTIRVDVRVVAATNKNLEEQIAQGTFREDLYYRLRVFPLSLPALRERGDDILRL 324

Query: 334 AEAFVRRCNPQRSRDIRAIHPDVIDAFMRYDWPGNVRELENIIERACILEGGEVLSPEAF 393
            +AF+ R     +        D  D  +RY WPGNVREL N +ER  IL  GE +  E  
Sbjct: 325 LDAFMLRLCRDHAFAPLTFTDDAQDVLLRYRWPGNVRELRNFVERMLILHAGESVDVEDL 384

Query: 394 PAE-FRGL--------------PHAVRNRALDISLPLEAARRHALDSFEREYLERALATS 438
           P E  R L                A     +D  L  +AAR    ++FE  +L   L   
Sbjct: 385 PPECLRDLSPSSDSATGTAAQSATATCGTGVDGILDFKAAR----NAFETRFLAEQLQEC 440

Query: 439 GGSIKGAAAIAGVTTRQIHKLMTRHSL 465
           GG++   A   G+    +H+ +  + +
Sbjct: 441 GGNVSRLAERIGLERSHLHRKLKGYGI 467