Pairwise Alignments

Query, 407 a.a., proline/arginine ABC transporter, permease component (from data) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 435 a.a., High-affinity branched-chain amino acid transport system permease protein BraE from Pseudomonas putida KT2440

 Score =  322 bits (824), Expect = 2e-92
 Identities = 183/405 (45%), Positives = 253/405 (62%), Gaps = 25/405 (6%)

Query: 2   QGIIKSLQVGLWFMFLTFPLMVIRVDTLNGTVDWRWQNMVMMGL--GTFALSFLWRYMLA 59
           + +++++  GL  + +  P++ + +D      + R    ++ G+  G F LS   +    
Sbjct: 21  RSLLETIVAGLLALIVFGPVVGVVLDGYTFNAEPRRVAWLVGGVMVGRFLLSLFLQTAPG 80

Query: 60  RKEAGGASARQGNAAAGGLMARVRSDARLRTPALLAVLVVFAVLPMLVSTYQTNIMISAL 119
           ++   G  +  G +         +S  R   PAL+ + +VF   P+  + Y   ++I  L
Sbjct: 81  QRMLLGFDS--GGSGVHVTAPDYKSRLRYIIPALIVIAIVF---PIFANKYLLTVVILGL 135

Query: 120 LYVMLGLGLNIVVGLSGQLVLGYVAFYAVGAYAYALLNADFGLGFWTVLPIGGALAAVFG 179
           +YV+LGLGLNIVVGL+G L LGYVAFYA+GAY  AL     GLGFW+VLP+    AA+ G
Sbjct: 136 IYVLLGLGLNIVVGLAGLLDLGYVAFYAIGAYGLALGYQYLGLGFWSVLPLAAIAAALAG 195

Query: 180 ILLGFPVLRLKGDYLAIVTLGFGEIVRLVLENWGSVTRGPSGI------------SKIAR 227
            +LGFPVLR+ GDYLAIVTLGFGEI+RLVL NW S T GP+G+             + A+
Sbjct: 196 CILGFPVLRMHGDYLAIVTLGFGEIIRLVLNNWLSFTGGPNGMPAPSPTFFGLEFGRRAK 255

Query: 228 PG------LFGMELSVSEATTYIYYLILAAVIFTIFAVGRLKDSRIGRAWQALREDEIAC 281
            G       FG E + S    +IY ++   V+  ++   RL    +GRAW+ALREDEIAC
Sbjct: 256 DGGVPIHEFFGFEYNASLKFVFIYAVLFMVVLAVLYIKHRLTRMPVGRAWEALREDEIAC 315

Query: 282 EAMGIDLTTTKLTAFALGACWAGFAGVIFAAKTTFINPASFTFLESAMILAMVVLGGMGS 341
            +MG++    KL+AF LGA  AG AGV FA    F+NP+SFTF ESA+ILA+VVLGGMGS
Sbjct: 316 RSMGLNHVLVKLSAFTLGASTAGLAGVFFATYQGFVNPSSFTFFESALILAIVVLGGMGS 375

Query: 342 TLGVVLGALVLILLPEYLRAFSEYRMLIFGAAMVLMMVFRPQGLV 386
           T+GVV+ A VL + PE LR+FSEYR+L+FG  MVLMM++RP+GL+
Sbjct: 376 TVGVVIAAFVLTVAPELLRSFSEYRVLLFGVLMVLMMIWRPRGLI 420