Pairwise Alignments

Query, 407 a.a., proline/arginine ABC transporter, permease component (from data) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 361 a.a., Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1) from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  253 bits (645), Expect = 8e-72
 Identities = 155/356 (43%), Positives = 210/356 (58%), Gaps = 50/356 (14%)

Query: 92  ALLAVLVVFAVLPMLVSTYQTNIMISALLYVMLGLGLNIVVGLSGQLVLGYVAFYAVGAY 151
           A  A+L++  +L    S     I+  AL+YV+L LGLNIVVG +G L LGY+AF+AVGAY
Sbjct: 15  AAAALLLLPIILQSTGSNSWVRIVDIALMYVLLALGLNIVVGYAGLLDLGYIAFFAVGAY 74

Query: 152 AYALLNADF--------------GLGF--WTVLPIGGALAAVFGILLGFPVLRLKGDYLA 195
            +ALL +                GL +  W V+ +  A+A V G++LG P L+L+GDYLA
Sbjct: 75  VFALLGSPHLADTFPAIKAMFPNGLHYNIWLVMILAAAVAGVVGMILGAPTLKLRGDYLA 134

Query: 196 IVTLGFGEIVRLVLENWG---SVTRGPSGISKIARPGLFGMELS--------VSEATTYI 244
           I+TLGFGEI+R+ L N     ++T GP GIS+I    +FG++L           +  T  
Sbjct: 135 IITLGFGEIIRIFLLNMDRPLNITNGPKGISQIDTISVFGLDLGKRLTIGDYTFQPVTLY 194

Query: 245 YYLILAAVIFTIFAVGRLKDSRIGRAWQALREDEIACEAMGIDLTTTKLTAFALGACWAG 304
           YYL L  V+  I    RL+DSRIGRAW A+REDEIA +AMG++    KL AF +GA + G
Sbjct: 195 YYLFLFFVVLAIVISYRLQDSRIGRAWMAIREDEIAAKAMGLNTRNLKLLAFGMGASFGG 254

Query: 305 FAGVIFAAKTTFINPASFTFLESAMILAMVVLGGMGSTLGVVLGALVLILLPEYLRAFSE 364
            +GV+FA+   F++P SF+ +ES M++AMVVLGG+G   GVVLGAL+L  LPE LR  + 
Sbjct: 255 VSGVLFASFQRFVSPESFSLMESVMVVAMVVLGGIGHIPGVVLGALLLAGLPEVLRHVAH 314

Query: 365 --------------YRMLIFGAAMVLMMVFRPQGLVSCRSREYDVNDPEAGKSGEK 406
                          R L+   AMV++M+ RP+GL            PE GKS  K
Sbjct: 315 PLTELTGGRLGPEILRQLLIALAMVIVMLLRPRGLWP---------SPEHGKSLSK 361