Pairwise Alignments

Query, 407 a.a., proline/arginine ABC transporter, permease component (from data) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 330 a.a., Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1) from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  218 bits (554), Expect = 3e-61
 Identities = 123/300 (41%), Positives = 176/300 (58%), Gaps = 4/300 (1%)

Query: 92  ALLAVLVVFAVLPMLVSTYQTNIMISALLYVMLGLGLNIVVGLSGQLVLGYVAFYAVGAY 151
           AL+         P  +  Y   ++   L++++  +GLN+ VG +GQ  LG+ AF+ +GAY
Sbjct: 8   ALVLCAAALLAAPHFMKNYGIYLLSYWLVFIIATMGLNLTVGYAGQKSLGHAAFFGIGAY 67

Query: 152 AYALLNADFGLGFWTVLPIGGALAAVFGILLGFPVLRLKGDYLAIVTLGFGEIVRLVLEN 211
             A++    GL FW  LP    +  V GI+LGFP LR++  YLA  TLGF   V LV+ N
Sbjct: 68  TVAIM-MKAGLSFWLGLPTAMLICFVVGIILGFPALRVQTIYLAFATLGFNTAVWLVMRN 126

Query: 212 WGSVTRGPSGISKIARPGLFGMELSVSEATTYIYYLILAAVIFTIFAVGRLKDSRIGRAW 271
              +T G  GI+ IARPGLFG+ L   E     Y+ +LA  +     +  L  S  G+A+
Sbjct: 127 EEWLTGGTFGINNIARPGLFGLSL---EGNLAYYHFVLAVTVLLAALLWWLLRSPWGKAF 183

Query: 272 QALREDEIACEAMGIDLTTTKLTAFALGACWAGFAGVIFAAKTTFINPASFTFLESAMIL 331
            ALR++ I  E++G+D  +  L AFA+GA +AG AG +FA+   FI PA FT   S M+ 
Sbjct: 184 TALRDNPIRAESLGVDTRSYTLLAFAIGAVYAGVAGALFASLVQFIEPAPFTVGASIMMY 243

Query: 332 AMVVLGGMGSTLGVVLGALVLILLPEYLRAFSEYRMLIFGAAMVLMMVFRPQGLVSCRSR 391
            MVV+GG G  LG VLGA V ++LPE+LR    + + +FG A+VL+M++ P GL+S   R
Sbjct: 244 LMVVVGGPGYFLGPVLGAAVGVILPEWLRFAQAWYLFVFGGAVVLLMIWLPDGLLSIPER 303