Pairwise Alignments

Query, 407 a.a., proline/arginine ABC transporter, permease component (from data) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 425 a.a., Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1) from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  326 bits (835), Expect = 9e-94
 Identities = 168/335 (50%), Positives = 228/335 (68%), Gaps = 22/335 (6%)

Query: 93  LLAVLVVFAVLPMLVSTYQTNIMISALLYVMLGLGLNIVVGLSGQLVLGYVAFYAVGAYA 152
           L+A+LV+    P +VS    +I    ++Y++LGLGLN+VVGLSG LVLGY  FYA+GAY 
Sbjct: 93  LMALLVIAVAWPFMVSRGSVDIATMTMIYIILGLGLNVVVGLSGLLVLGYGGFYAIGAYT 152

Query: 153 YALLNADFGLGFWTVLPIGGALAAVFGILLGFPVLRLKGDYLAIVTLGFGEIVRLVLENW 212
           +ALLN  +GLGFWT LP+ G ++A  G LLGFPVLRL+GDYLAIVTLGFGEIVR++L N 
Sbjct: 153 FALLNHYYGLGFWTCLPLAGLVSAAAGFLLGFPVLRLRGDYLAIVTLGFGEIVRILLLNN 212

Query: 213 GSVTRGPSGISKIARPGLFGMELS--------------------VSEATTYIYYLILAAV 252
             +T GP+GIS+I +P LFG+E S                     S+   ++Y + L  V
Sbjct: 213 TEITGGPNGISQIPKPTLFGLEFSRSTREGGWDTFSNFFGVKYDPSDRVIFLYLVALLLV 272

Query: 253 IFTIFAVGRLKDSRIGRAWQALREDEIACEAMGIDLTTTKLTAFALGACWAGFAGVIFAA 312
           + ++F + RL    +GRAW+ALREDEIAC ++G+  T  KLTAF + A +AGFAG +FAA
Sbjct: 273 VLSLFVINRLLRMPLGRAWEALREDEIACRSLGLSPTRIKLTAFTISAAFAGFAGTLFAA 332

Query: 313 KTTFINPASFTFLESAMILAMVVLGGMGSTLGVVLGALVLILLPEYLRAFSEYRMLIFGA 372
           +  F++P SFTF ESA +LA+VVLGGMGS   V+L A++L++  E +R F+EY ML+ G 
Sbjct: 333 RQGFVSPESFTFAESAFVLAIVVLGGMGSQFAVILAAVLLVVSRELMRDFNEYSMLMLGG 392

Query: 373 AMVLMMVFRPQGLVSCRSREYDVNDPEAGKSGEKA 407
            MVLMM++RPQGL+     +  +   +A   GE+A
Sbjct: 393 LMVLMMIWRPQGLLPMTRPQLKLKSGQA--KGEQA 425