Pairwise Alignments

Query, 1513 a.a., sensor/response regulator (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 995 a.a., PAS domain S-box protein from Magnetospirillum magneticum AMB-1

 Score =  257 bits (657), Expect = 4e-72
 Identities = 223/810 (27%), Positives = 357/810 (44%), Gaps = 57/810 (7%)

Query: 711  LQATNEELHSINEELYTVNAEFERKNDQLRILGEDYAQLFDTIPIAIASLDESLRVRRFN 770
            L+   EEL + N+EL     + E++N++ R        LFD  P+    LD+ L +   N
Sbjct: 43   LRVHEEELKAQNDELQQAREDIEKQNNKNR-------DLFDCAPVGYFVLDDRLSIIDVN 95

Query: 771  -AGMSAIFHLQPHDVGRPLQQIAS--CLAEPDNLFKSLALGLSEGGTHDSEARLTDGRWC 827
             AG+  I + + H +G P +         E D  F  +       G   +E+RL   +  
Sbjct: 96   IAGLKLIGNDRAHVIGMPFRMFVDGKVRQEVDGHFSMVRAH----GNASTESRLAPHQKA 151

Query: 828  QQRI--HAVR--DETGATEHMLLTFMDITHVKHAEAMRQEARSLDEVSRNVPGVVFKLCA 883
               I   +VR   E G     L T MDIT  K AE       +   ++R+   ++     
Sbjct: 152  PVPIILKSVRLGTEWGEGWRCLTTVMDITDRKVAEETAYRHSAELAITRDKLALIIDCMP 211

Query: 884  PHDGNI--------------RVEYVGGGTVELC-GLSQEEIKADPHALVALFGPDVVPHI 928
             H   +              +     GG+   C G     +     A      P +  H 
Sbjct: 212  QHIAVLDRHGVITLVNEAWRKFSIENGGSSTFCIGEYYGSVCGGMEASEC--PPQLTLHT 269

Query: 929  LAGISATDGEGTPVDVEIPLHCTGGTKWVHVQATSTPARGGGTEWYGVAVDATERRYDAT 988
            L  +    G+   + +E P H     +W  +  +  P  G       V  + T R+    
Sbjct: 270  LMDVIT--GQSPGISLEYPCHSPTEQRWFKLDIS--PISGVEPGAIVVHTNITSRKIMEM 325

Query: 989  RMHNAADRYLRILDHAPMLIWRSDTTGACDWFNTTWLDFTGRTMEQEYGYGWAGGVHPDD 1048
             + N+ DR+      +    W  D      WF+  +   TG   ++  G      +    
Sbjct: 326  NVQNSRDRFSDFARSSSDWYWEMDENLIFTWFSERFSYVTGLDPQEVIGKTREYLISEIA 385

Query: 1049 YDRCVSIYQKAFALQQAFEMNYRLKRHDGQFRWLVDCGKPLPDLDGTFSGFIGYCYDITD 1108
             +  V       A +   + +Y +    G+ ++L   G P+ D +  F G+ G   D+T 
Sbjct: 386  PESLVDHQGDLSARRPFRDFDYAIDTGRGK-KYLRISGVPVFDKECGFIGYRGTGSDVT- 443

Query: 1109 AVNALESMCEASKR-AEEANRTKSEFLANVSHELRTPLNGALGMLQLLELSSLSPEQRQY 1167
            A+  +E+    SK  AE AN+ KS FLAN+SHE+RTP+NG +GM  L     L  +QR +
Sbjct: 444  AIKEIEAQLRESKSVAEAANKAKSLFLANMSHEIRTPMNGIIGMAHLALGGELPAKQRHH 503

Query: 1168 VTTAIRSGQNLVRLLSDILDLSRIEAGKLVIEAIPCDIRELVDEVFSTFSLDATGKGITL 1227
            + +  +S Q L+ +++DILDLS+ EAGK+VI+A P D+  L+DE  S  +  A+ K + +
Sbjct: 504  IQSIKQSAQRLLGIINDILDLSKAEAGKVVIDAAPFDLANLIDEAISVVAAQASEKRLPI 563

Query: 1228 ETTIAPGTPTYVRTDPLRLRQTLFNLVGNAVKFTEKGGVRVEFSTASMR-GDAIVLFCTV 1286
               IA   P  V  DPLR+RQ L N + NAVKFT  GG+ V+      +      L   V
Sbjct: 564  NVRIASEVPRGVIGDPLRIRQILLNYLSNAVKFTSSGGIDVDVQIEGGKTAPPTKLRFAV 623

Query: 1287 RDTGPGIPEDRIESIFQPFTQLDGSYTRRHSGLGLGLGIVCRLMELFGGSIEVESAPDMG 1346
             DTG G+  ++  ++FQ F Q + S + +  G GLGL I  +L EL GG   VES    G
Sbjct: 624  SDTGCGLTPEQQATLFQSFQQAEASTSAKFGGTGLGLAIARQLAELMGGQAGVESQYGSG 683

Query: 1347 TAMHFAIPVG--------KTRRPQGRKVKET---EDEGDRHALYLLVAEDDAINRLTLTR 1395
            +   F +            ++     K+      +D        +L+AEDD  N++    
Sbjct: 684  STFWFTVQFQGAVDGVDCPSKFLSPIKIHNNFAHQDHSILQGAQVLLAEDDLTNQMVAVG 743

Query: 1396 MLEQLGHRAHAVEDGSQALQALAEQHFDAVFLDIQMPVLDGMATLQAIRTGQVAGLPPTI 1455
            +LE  G     V +G+ A++  A   ++ V +D++MP +DG+   + IR          +
Sbjct: 744  LLEAAGMLVDVVGNGAAAVEKAASGKYEIVLMDVRMPGMDGITATRLIRENVEL---LDL 800

Query: 1456 PVVAVTAHAMQGDRERFMAKGADAYVQKPY 1485
            P+VA+TA+AM   ++  +A G   +V KP+
Sbjct: 801  PIVAMTANAMNEHKDECLAAGMSDFVSKPF 830