Pairwise Alignments

Query, 1513 a.a., sensor/response regulator (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 1510 a.a., PAS domain S-box protein from Magnetospirillum magneticum AMB-1

 Score =  415 bits (1067), Expect = e-119
 Identities = 308/1029 (29%), Positives = 503/1029 (48%), Gaps = 63/1029 (6%)

Query: 28   PLVVGIGASAGGLEALEGLFRHMPTTTGAAFVVIQHLSPDFPSFMDELLARQTVMTIVVV 87
            P V+GIGASAGGLEAL      +P   G  +V+ QH+SP   S M ++L+R+T + +  +
Sbjct: 9    PHVIGIGASAGGLEALSQFVGGLPLDLGCIYVIAQHMSPTHRSMMADILSRETRLPVREL 68

Query: 88   QDGMCPAPDHIYLLPPGKEMEITLDGFILRDKSSYDNRPSMPINTFFASLAAWYGENAAG 147
             DG  P PD IY++PPG  +    + F+L  ++S +  P   IN  F S+A  + E A G
Sbjct: 69   ADGERPQPDVIYIIPPGTNLVFKDECFVL-SQASPEISPKPSINILFQSMADEFEERAIG 127

Query: 148  VVLSGTGTDGASGLEAISAAGGLVLVQLPESAAFDGMPKAAAAACRAAVLATPDEMPDIL 207
            ++LSGTG+DG  GL AI +AGG+  VQ+PE+A +DGMP++A  AC A  + +PD++   L
Sbjct: 128  IILSGTGSDGTRGLRAIKSAGGITFVQIPETAKYDGMPRSAIDACVADRIVSPDQIGREL 187

Query: 208  AAFISGSPLPFEHPGLPADPASGGPAPDALQTIFTLLQRHGGLDFRDYKPATIARRIMRR 267
               +         PG+  +  SG   P  L  +F  ++    +DF  YK +T+ RR+ RR
Sbjct: 188  ERLV-------RFPGMLPNLESGEQRPAELSDLFERVRLRTKIDFSSYKLSTVQRRLQRR 240

Query: 268  IRLEQHADIEGYARHLRDDPQAVQTLFRDLLIGVTTFFRDETAFDTLAATVIPELFRKQG 327
            +       +  Y      DP  +  L ++ LI VT FFRD+ AF  L      E+  ++ 
Sbjct: 241  MAATNTGTLSEYLSKTDSDPDELDALAKETLISVTEFFRDKDAFRALERHA-REIVSRKL 299

Query: 328  DRGEIRLWVAGCASGEEAYSLGMLLLEAAPQFDFTGRISIFATDVHRHSLDRASAGVYTK 387
               EIR+WV GCA+GEEAYSL ++  E   +     R+ +FATD+  +++  A  G+Y +
Sbjct: 300  PGEEIRVWVVGCATGEEAYSLAIMFSELVSERGIGSRLQVFATDIDNNAMSVARRGIYNQ 359

Query: 388  DSLQALSPRRLQRFFIPEGDETYRVAPELRSLVLFTQHNILADPPFTRVDLVSCRNLLIY 447
             ++  +    + ++FIP G+  +    ELR  V F + ++  DPPF R+DLV+CRN++IY
Sbjct: 360  TAMAEMPQEYVSKYFIPCGN-GFEPTKELRDCVTFARQDVNVDPPFLRLDLVTCRNVMIY 418

Query: 448  FGVDAQERAIARLHMALRPGGVLFMGASETTGRLHPIFEPLDPRLRIFTKRPDTLGMTAT 507
            F  D Q + ++ L  +LR  G+LF+G SET  +   +F  +D R RIF  R  +  +T  
Sbjct: 419  FNSDLQAKVLSILRYSLREDGLLFLGRSETVTQQEAMFASVDRRARIFRPRGQSRPITMG 478

Query: 508  HLVHPAVIDAHRLATSSPQPSERQLLRDYDALLQRFAPDGMLVDDRFAVLHFFGNGASYL 567
             LV    +   R    +P  S  +L    +AL   F P  ML+D    +LH  G  + ++
Sbjct: 479  KLVR-GQLKVPRHEPRNPDRSNERLF--LNALADHFGP-AMLIDSGCRILHSHGPVSRFI 534

Query: 568  TQHTGRTDRPITDMVEGDLRLALSSALQRASTTGETARFKSIRVPGNGGDRLVDVEVMPI 627
               TG  +  +  ++  +    + + + RA     ++  +  R+  +   ++  + V P+
Sbjct: 535  HFPTGTPEMNLAQLIVPEFSNEILTTMHRARRRQASSYSRKRRI-SSLDKQVWRLAVHPV 593

Query: 628  GNKPSDGKHYHVALQSSHPVLIRPLVEPAATGHGTGLLASRVAELEAELAETRSSLRD-- 685
            G + ++   + V  + S        V+      G  +        + ELA TR  L+   
Sbjct: 594  G-ELAEADTFLVVFERSAQADAANAVKETEPQDGAEVFP------DDELASTREHLQTLM 646

Query: 686  -----SIEQVHVTNEELQATNEELLSANEELQATNEELHSINEELYTVNAEFERKNDQLR 740
                 S E++   NEE+QA+NEEL ++NEEL+A+NEEL + NEEL +VN E   K+ +L 
Sbjct: 647  EEMAASNEEMQALNEEVQASNEELQASNEELEASNEELQATNEELVSVNEESLIKSAELA 706

Query: 741  ILGEDYAQLFDTIPIAIASLDESLRVRRFNAGMSAIFHLQPHDVGRPLQQIASCLAEPDN 800
             +  D+  +++TI   I   D  L ++R N      + L     G  + ++    A  DN
Sbjct: 707  AINSDFEGVYNTIDFPIMVFDPELFLKRANGAAVRTYDLPLSASGMHIGRL-KLPAFLDN 765

Query: 801  LFKSLALGLSEGGTHDSEARLTDG-RWCQQRIHAVRDETGATEHMLLTFMDITHVKHAEA 859
            + KSL   L+E        ++T G R  Q  +      TG  + ++L  +D T +  A+ 
Sbjct: 766  IDKSLTAALTE--QRKESFQITFGKRTFQVFVTPSMSMTGTPQSVVLVVVDHTDLVEAQE 823

Query: 860  MRQEA--RSLDEVSRNVPGVVFKLCAPHDGNIRVEYVGGGTVELCGLSQEEI--KADPHA 915
              +E+  R L  ++ +   V  K     D   R E++     EL GLS EE+  K D   
Sbjct: 824  QIRESQERLLSIMNHSTSAVSLK-----DAAGRYEFINMRFEELFGLSAEEVIGKTDQQ- 877

Query: 916  LVALFGPDVVPHILAGISATDGEGTPV----DVEIPLHCTGGTKWVHVQATSTPARGGGT 971
               LF  D+   + +      G+ + +    ++  P      T  V + +   P      
Sbjct: 878  ---LFSRDIAQLLRSRDLEVMGQLSAIQHLEEMVFP------TSKVWLDSVRFPIFDSN- 927

Query: 972  EWYGVAVDATERRYDATRMHNAADRY---LRILDHAPMLIWRSDTTGACDWFNTTWLDFT 1028
               GV      +  D T  H+A ++     ++ D A   I  +D++G     N ++   T
Sbjct: 928  ---GVVRAVCSQSTDVTMKHHAEEQLRLAAKVFDRAGEAITITDSSGNIITVNDSFCRIT 984

Query: 1029 GRTMEQEYG 1037
            G + ++  G
Sbjct: 985  GYSHQEVIG 993