Pairwise Alignments

Query, 715 a.a., response regulator/sensory box/GGDEF domain/EAL domain protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 1247 a.a., diguanylate cyclase from Pseudomonas simiae WCS417

 Score =  361 bits (927), Expect = e-103
 Identities = 228/584 (39%), Positives = 326/584 (55%), Gaps = 25/584 (4%)

Query: 143  EARTRELRVSNEQLRSTQS-ELEDKSLFLETLIESLPNPLFYKTLDGVYI--------GC 193
            E  +R L + ++    T + ++ ++ L  E L ++    +F  T +GV I          
Sbjct: 650  ELSSRPLPIGDDDCMLTIARDITERQLMQEKLQQAAT--VFESTAEGVLITDTRQNISAV 707

Query: 194  NKAFSQLLGIPREKMVGRSARDL---LPDHA-YAQIIAGDCPSGSDAGEHSCVFDILGAD 249
            N+AFS++ G    + +G + R L   L D A YA +       G   GE S        +
Sbjct: 708  NRAFSEITGYSEAEALGNTPRLLASGLHDSAFYAAMWHQLTAQGHWQGEISN----RRKN 763

Query: 250  GHIHTLALYKSTYSDSQGQVSGIVGTFLDITELKRKEAQIVHQATHDELTGLLNRFGMRQ 309
            G ++   L  S   + +  ++  V  F DI+ LK  +A++ +QA HD LTGL NR     
Sbjct: 764  GELYPSWLTISAVRNREQLITHFVAVFADISSLKLAQARLDYQAHHDPLTGLPNRTLFES 823

Query: 310  HVDRLIVGGQ---MSFALLVIDLDDFKTINDSLGHALGDRLLHKAAERIVELVGSQGIVG 366
             +   + G Q      A+L +DLD FK INDSLGH +GD LL   A R+ E +     V 
Sbjct: 824  RLQAALNGHQETGQQGAVLFLDLDRFKHINDSLGHPIGDLLLKDIAVRLKEQLRDIDTVA 883

Query: 367  RPGGDEYVVLLYNVD-AEAAHAMARRILDIFTDSLSVSGHEVYISLSIGIAVYPEDGDDA 425
            R GGDE+++LL  +  A  A  +A ++L  FT       HE +IS SIG ++YPEDG D 
Sbjct: 884  RLGGDEFIILLPGLQHASDAQYLANKLLACFTPPFQAGEHEFFISASIGTSLYPEDGTDV 943

Query: 426  ANLFKCCDIAMYRAKEEGGARAQRYLAAMQDVITSRLALEKNLRKALERGEFVLHYQPKV 485
            A L K  D AMYR+K +G  R + Y   +      R+ALE  LR+A+ER E  L+YQPK+
Sbjct: 944  ATLVKNADAAMYRSKAKGRNRVESYTRDLTAQANERVALEHELRRAIERDELSLYYQPKL 1003

Query: 486  DIRTGAVTGMEALVRWVRDDGTIVPPQDFIPVAEKTGLIVALGEFVLREACRQMHAWQKR 545
             + T  + G EAL+RW       VPP+ FI +AE+ G+I+ +G++VL +ACRQMHAWQ  
Sbjct: 1004 SLATHELIGAEALIRWHHPTFGDVPPEHFIALAEENGMILQIGDWVLEQACRQMHAWQGH 1063

Query: 546  FGRL-KMAVNISARQFQ-PGLPDTVASALADAGLDPGLLELEITETTMMRDLALTVSVLE 603
            F     ++VN++  Q + PGL   +   L D  LDPG L+LEITE  +M      + VL 
Sbjct: 1064 FDDFGPLSVNLAGAQLRHPGLLGRIKQLLHDYQLDPGRLQLEITENFIMSQAEEALDVLH 1123

Query: 604  RLTTGGIAVAIDDFGTGHSSLYYLKTFPISSIKIDRSFVRDIPNDETDATIVTTVVSMGR 663
            +L   G+ +AIDDFGTG+SSL YLK  P+  +KID+SFVR +P+D  DA IV  ++++G 
Sbjct: 1124 QLKDLGVQLAIDDFGTGYSSLSYLKRLPLDFLKIDQSFVRGLPDDPHDAAIVRAIIALGH 1183

Query: 664  NLGIGIVAEGVETEAQLDFLRSLECPEVQGYYFSKPLPPHAFEA 707
            ++   I+AEGVE  AQ  FL +  C ++QGY  S PLPP  F A
Sbjct: 1184 SMQFTIIAEGVENPAQQAFLAAEGCEQMQGYIVSLPLPPALFAA 1227



 Score = 33.5 bits (75), Expect = 7e-05
 Identities = 21/80 (26%), Positives = 38/80 (47%), Gaps = 1/80 (1%)

Query: 138 LEFEVEARTRELRVSNEQLRSTQSELEDKSLFLETLIESLPNPLFYKTL-DGVYIGCNKA 196
           +E   E   R L +   + + T+  L+       ++ +  P+ L    L DG  +  NKA
Sbjct: 407 IEHGHEPVLRGLMIDISEAKRTEEALQLSEQKFASVFQQCPDMLVIARLSDGCLLEVNKA 466

Query: 197 FSQLLGIPREKMVGRSARDL 216
           F   +G+  E +VG++A +L
Sbjct: 467 FEDQIGLKAEHVVGKTATEL 486



 Score = 27.7 bits (60), Expect = 0.004
 Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 1/63 (1%)

Query: 155 QLRSTQSELE-DKSLFLETLIESLPNPLFYKTLDGVYIGCNKAFSQLLGIPREKMVGRSA 213
           QL+ TQ +L+  +  F +    S    L  +  DG+ I  N  FS++ G      + +S 
Sbjct: 548 QLKETQQQLQTSEEKFAKAFHASPDGLLLSRQRDGLLIEVNDGFSRITGFTSATSLDQST 607

Query: 214 RDL 216
            DL
Sbjct: 608 LDL 610