Pairwise Alignments

Query, 715 a.a., response regulator/sensory box/GGDEF domain/EAL domain protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 1510 a.a., PAS domain S-box protein from Magnetospirillum magneticum AMB-1

 Score =  339 bits (870), Expect = 5e-97
 Identities = 206/536 (38%), Positives = 293/536 (54%), Gaps = 21/536 (3%)

Query: 188  GVYIGCNKAFSQLLGIPREKMVGRSARDLLP--------DHAYAQIIAGDCPSGSDAGEH 239
            G  I  N +F ++ G   ++++G++ R L          D  +  +I   C  G      
Sbjct: 971  GNIITVNDSFCRITGYSHQEVIGKNPRFLQSGKHGKDFYDAMWRSLIEQGCWQGEIFNRR 1030

Query: 240  SCVFDILGADGHIHTLALYKSTYSDSQGQVSGIVGTFLDITELKRKEAQIVHQATHDELT 299
                     +G I+   L  ++  D  G V   V  F DI+ +K  + +I   ATHDELT
Sbjct: 1031 K--------NGEIYPEWLTVNSVRDENGSVVNYVAIFSDISAIKSSQRRIEFLATHDELT 1082

Query: 300  GLLNRFGMRQHVDRLIVGGQMS---FALLVIDLDDFKTINDSLGHALGDRLLHKAAERIV 356
            G+ NR  +   +   +   +      A+L IDLD+FK INDSLGH +GD+LL +A ER+ 
Sbjct: 1083 GIPNRSLLMDRLKHAVAQAKRQKTKLAVLFIDLDNFKVINDSLGHDVGDQLLKQATERLK 1142

Query: 357  ELVGSQGIVGRPGGDEYVVLLYNVDAEAAHAMARRILDIFTDSLSVSGHEVYISLSIGIA 416
              V     + R GGDE+V +L +V  E  +++A RI+D    S S++   +++S SIGI+
Sbjct: 1143 HCVRDSDTLARLGGDEFVAVLTDVSLEKVNSVAARIVDFLGASFSINDKSLFVSASIGIS 1202

Query: 417  VYPEDGDDAANLFKCCDIAMYRAKEEGGARAQRYLAAMQDVITSRLALEKNLRKALERGE 476
            V+P+DG D+  L K  D AMYRAKE G  + Q +   M+ +   RL LE  LR ALE   
Sbjct: 1203 VFPDDGQDSLTLLKHADTAMYRAKERGRNQYQFFADEMKVIALQRLTLETGLRLALETKS 1262

Query: 477  FVLHYQPKVDIRTGAVTGMEALVRWVRDDGTIVPPQDFIPVAEKTGLIVALGEFVLREAC 536
            F + YQP+VDI TG V G EAL+RW       V P  FIP+AE  GLI A+GE V     
Sbjct: 1263 FRMCYQPQVDIHTGEVVGAEALLRWRDPTLGEVSPAHFIPIAESCGLIGAIGETVFTMVL 1322

Query: 537  RQMHAW-QKRFGRLKMAVNISARQFQ-PGLPDTVASALADAGLDPGLLELEITETTMMRD 594
             Q+  W +K     ++A+N+SA Q +  G    V S L  +G+   L+ +E+TE+ +M  
Sbjct: 1323 EQIAYWREKGLTVPRIAINVSAHQLRDAGFAAKVGSWLDSSGISSELIGIELTESALMER 1382

Query: 595  LALTVSVLERLTTGGIAVAIDDFGTGHSSLYYLKTFPISSIKIDRSFVRDIPNDETDATI 654
            + +   +L      G+ V+IDDFGTG+SSL YLK  PI  +KIDRSFV  I  +  D +I
Sbjct: 1383 IDMVKEMLTSFDGMGMKVSIDDFGTGYSSLSYLKKLPIHELKIDRSFVDGIALERDDRSI 1442

Query: 655  VTTVVSMGRNLGIGIVAEGVETEAQLDFLRSLECPEVQGYYFSKPLPPHAFEAWME 710
               ++ M R LG+ +VAEGVE+E QL  L+   C  VQGY F +PL P AF   +E
Sbjct: 1443 AKAIIDMSRALGMRVVAEGVESEEQLGVLKEEGCDMVQGYLFHRPLSPEAFAKVIE 1498



 Score = 31.6 bits (70), Expect = 3e-04
 Identities = 27/81 (33%), Positives = 37/81 (45%), Gaps = 9/81 (11%)

Query: 115 EHAVMKALERARLLDERQRYQERLEFEVEARTRELRVSNEQLRSTQSEL-----EDKSLF 169
           EH      E A   +E Q   E    EV+A   EL+ SNE+L ++  EL     E  S+ 
Sbjct: 640 EHLQTLMEEMAASNEEMQALNE----EVQASNEELQASNEELEASNEELQATNEELVSVN 695

Query: 170 LETLIESLPNPLFYKTLDGVY 190
            E+LI+S          +GVY
Sbjct: 696 EESLIKSAELAAINSDFEGVY 716