Pairwise Alignments

Query, 715 a.a., response regulator/sensory box/GGDEF domain/EAL domain protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 830 a.a., two-component system response regulator from Magnetospirillum magneticum AMB-1

 Score =  348 bits (894), Expect = e-100
 Identities = 205/548 (37%), Positives = 307/548 (56%), Gaps = 6/548 (1%)

Query: 160 QSELEDKSLFLETLIESLPNPLFYKTLDGVYIGCNKAFSQLLGIPREKMVGRSARDLLPD 219
           +  LED      T+ ES    LF        I  N AF++L G P ++++GR+ + L   
Sbjct: 260 KKRLEDHMRLAATVFESTGEGLFVTDEKRQIIHVNPAFTELTGYPADEVIGRTPKFLASG 319

Query: 220 HAYAQIIAGDCPSGSDAGEHSCVFDILGADGHIHTLALYKSTYSDSQGQVSGIVGTFLDI 279
               +       + ++ G+           G +    L  S   + +G+++  V  F DI
Sbjct: 320 RHTPEFYDAVFKTLAECGKWQGEIWNRRKTGEMFAEWLNISVVRNERGELTNYVAVFSDI 379

Query: 280 TELKRKEAQIVHQATHDELTGLLNRFGMRQHVDRLIVGG---QMSFALLVIDLDDFKTIN 336
           T  K+ E ++ +QA HD LT L NR   ++ + R +      Q   ALL IDLD FK +N
Sbjct: 380 TSRKQDEERLNYQANHDPLTRLPNRTLFQERLTRALTRAHRNQAIVALLFIDLDFFKQVN 439

Query: 337 DSLGHALGDRLLHKAAERIVELVGSQGIVGRPGGDEYVVLLYNVDAEAAHAM-ARRILDI 395
           D+LGH  GD LL + AER+   V     V R  GDE+ V+L  +      A+ A +IL +
Sbjct: 440 DTLGHLAGDILLQQVAERLTSCVRQGDTVARLAGDEFTVILEEISEPRDGAVVAHKILSL 499

Query: 396 FTDSLSVSGHEVYISLSIGIAVYPEDGDDAANLFKCCDIAMYRAKEEGGARAQRYLAAMQ 455
             +   + GHE  IS SIG+A+YP DG DA  L K  D AMYRAK +G    + +  ++ 
Sbjct: 500 LAEPFDLQGHEARISSSIGVALYPSDGGDAQTLIKLADAAMYRAKHQGRNACRFHSESIN 559

Query: 456 DVITSRLALEKNLRKALERGEFVLHYQPKVDIRTGAVTGMEALVRWVRDDGTIVPPQDFI 515
                RLALE  LR A+ER EF+LHYQP  D R+G+V  +EAL+RW   D  ++ P  F+
Sbjct: 560 AQAFERLALESALRHAVERREFLLHYQPIFDARSGSVVAVEALLRWRHPDFGMIMPNQFL 619

Query: 516 PVAEKTGLIVALGEFVLREACRQMHAW-QKRFGRLKMAVNISARQFQ-PGLPDTVASALA 573
           P+AE+TGLI+ +G+FVL EACRQ  AW       LK+ +N+S+RQ + P L + +A+AL 
Sbjct: 620 PLAEETGLIMPVGKFVLDEACRQAKAWLDAGHTGLKVGINLSSRQLRAPELIEDIAAALE 679

Query: 574 DAGLDPGLLELEITETTMMRDLALTVSVLERLTTGGIAVAIDDFGTGHSSLYYLKTFPIS 633
            +GL P  LEL++ E+ ++       ++  +  T G+ +AID FG+G+SS  +L+  P +
Sbjct: 680 GSGLPPSALELDVPESAIIDKGQDVDAIFTQFKTLGVRMAIDAFGSGYSSFAFLRKLPSN 739

Query: 634 SIKIDRSFVRDIPNDETDATIVTTVVSMGRNLGIGIVAEGVETEAQLDFLRSLECPEVQG 693
           ++KID+ FVRD  +   ++ IVT +V++ R L + +VA G+ETE QL  L   +C  VQG
Sbjct: 740 TLKIDQGFVRDAASGAEESEIVTAIVAVARGLHLSVVAPGIETEEQLAHLVKYDCDMVQG 799

Query: 694 YYFSKPLP 701
           + F+ P+P
Sbjct: 800 FLFAHPMP 807



 Score = 84.0 bits (206), Expect = 3e-20
 Identities = 77/302 (25%), Positives = 128/302 (42%), Gaps = 37/302 (12%)

Query: 4   SPARILCIDDDDADRMNLVAYLEDSG---YIVLEAANGRAGLDVFRAEHPDLILVDLRMP 60
           S   +L ++D+  D   +  YL +     + V++AA    GL   +A+  D++L+DL +P
Sbjct: 9   SALTVLVVEDNPGDARLVELYLHEDPARPFKVVKAARLSEGLAALQAQPIDVVLLDLSLP 68

Query: 61  VMGGMEVVAHMREEAPGVPVIVVSGAGILEEAVEALRRGAWDYVTKPVLDMRVLEHAVMK 120
              GM+ +A +R   PG+PV+V++G      A+EALR+GA DY+ K   D  ++  A+  
Sbjct: 69  DSFGMDSLARLRAANPGIPVVVLTGTSDEALALEALRQGAQDYLVKGQGDGELVRRAIRY 128

Query: 121 ALERARLLDERQRYQERLEFEVEARTRELRVSNEQLRSTQSELEDKSLFLETLIESLPNP 180
           A+ R+                  A    LR S  + R+              L ++    
Sbjct: 129 AIGRS------------------AADAALRTSESRFRA--------------LFDNAGTG 156

Query: 181 LFYKTLDGVYIGCNKAFSQLLGIPREKMVGRSARDL-LPDHAYAQIIAGDCPSGSDAGEH 239
           +      G YI CN AF  ++G    ++   + RD+  P+   A     D         +
Sbjct: 157 VILSDAAGAYIHCNPAFCTMVGYSDAELQKMTYRDITYPEDMNAHTQMRDDMMAGRTDSY 216

Query: 240 SCVFDILGADGHIHTLALYKSTYSD-SQGQVSGIVGTFLDITELKRKEAQIVHQATHDEL 298
                 +  DG+I    L  +   + S  ++   V    D+TE KR E  +   AT  E 
Sbjct: 217 ELTKRYIRRDGNILWARLTVTAMREGSDNELRFTVAVVEDVTEKKRLEDHMRLAATVFES 276

Query: 299 TG 300
           TG
Sbjct: 277 TG 278