Pairwise Alignments

Query, 607 a.a., sensory box/GGDEF domain protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 1510 a.a., PAS domain S-box protein from Magnetospirillum magneticum AMB-1

 Score =  173 bits (438), Expect = 6e-47
 Identities = 136/461 (29%), Positives = 210/461 (45%), Gaps = 41/461 (8%)

Query: 143  VMDVTELDHRKEGLRDAHRFLQNVVDALPCPLFFKDMNGAYTLFNHAFSDMLGLTPENLQ 202
            V+D T+L   +E +R++   L ++++     +  KD  G Y   N  F ++ GL+ E + 
Sbjct: 812  VVDHTDLVEAQEQIRESQERLLSIMNHSTSAVSLKDAAGRYEFINMRFEELFGLSAEEVI 871

Query: 203  GKNADDIAPPDLAAVYHSMDQALLDAKGPASQRYESAFTTPH-GLRHVLFDKATVVDDEG 261
            GK    +   D+A +  S D  ++          E  F T    L  V F    + D  G
Sbjct: 872  GKTDQQLFSRDIAQLLRSRDLEVMGQLSAIQHLEEMVFPTSKVWLDSVRFP---IFDSNG 928

Query: 262  TARGLVGIITDITGRKQAEDALRRVEARIRALVHNASDGFFSVTPE-GYITESNPAMCKL 320
              R +    TD+T +  AE+ LR     + A V + +    ++T   G I   N + C++
Sbjct: 929  VVRAVCSQSTDVTMKHHAEEQLR-----LAAKVFDRAGEAITITDSSGNIITVNDSFCRI 983

Query: 321  LGLKVAPSSGERGELTCVAPDDDESSDANRAQNILNLPDMFAEGREAWDAALHRLGTGAP 380
             G       G+            +  DA     I          +  W            
Sbjct: 984  TGYSHQEVIGKNPRFLQSGKHGKDFYDAMWRSLI---------EQGCWQG---------- 1024

Query: 381  PAPFEVRVRRDDGQTV--WLSLALWPVDSVPEEDGPPPAVEGMAHDITAHKLAEMDLTRR 438
                E+  RR +G+    WL+     V+SV +E+G       +  DI+A K ++  +   
Sbjct: 1025 ----EIFNRRKNGEIYPEWLT-----VNSVRDENGSVVNYVAIFSDISAIKSSQRRIEFL 1075

Query: 439  IVTDPLTGLFNRAHMEDMLPRMLTRAAEDGRTLGLLFIDLDGFKAVNDTYGHAVGDTLLQ 498
               D LTG+ NR+ + D L   + +A      L +LFIDLD FK +ND+ GH VGD LL+
Sbjct: 1076 ATHDELTGIPNRSLLMDRLKHAVAQAKRQKTKLAVLFIDLDNFKVINDSLGHDVGDQLLK 1135

Query: 499  QVAGRLRRRLRHTDIAIRLGGDEFAVLLWDVAGKEAVERIGAGILSIMAPAFTCTDIPCS 558
            Q   RL+  +R +D   RLGGDEF  +L DV+  E V  + A I+  +  +F+  D    
Sbjct: 1136 QATERLKHCVRDSDTLARLGGDEFVAVLTDVS-LEKVNSVAARIVDFLGASFSINDKSLF 1194

Query: 559  VSASIGASLYPQHADDAPSLLRLADEAMYRAKAEGKNRMAF 599
            VSASIG S++P    D+ +LL+ AD AMYRAK  G+N+  F
Sbjct: 1195 VSASIGISVFPDDGQDSLTLLKHADTAMYRAKERGRNQYQF 1235