Pairwise Alignments

Query, 607 a.a., sensory box/GGDEF domain protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 424 a.a., GGDEF domain-containing protein from Magnetospirillum magneticum AMB-1

 Score =  184 bits (468), Expect = 5e-51
 Identities = 144/426 (33%), Positives = 204/426 (47%), Gaps = 47/426 (11%)

Query: 180 NGAYTLFNHAFSDMLGLTPENLQGKNADDIAPPD---LAAVYHSMDQALLDAKGPASQRY 236
           +G     NH F D++G+    + G  A D    D      + H      +D      +R 
Sbjct: 27  DGVIVFANHTFCDLIGVPRVTVLGSKARDYYVDDHQRATVIKHMKRHGSVDHAEVQFRRS 86

Query: 237 ESA-FTTPHGLRHVLFDKATVVDDEGTARGLVGIITDITGRKQAEDALRRVEARIRALVH 295
           + A F T   +R  LF         GT    +  + DIT RK +E+ L+ + A++   V 
Sbjct: 87  DGAPFWTLLTIRESLF---------GTEPVNLAWVYDITERKTSEERLQ-LAAKV---VE 133

Query: 296 NASDGFFSVTPEGYITESNPAMCKLLGLKVAPSSGERGELTCVAPDDDESSDANRAQNIL 355
            A++G     P+G I   N A  ++ G  +  + G++  +            + R +N  
Sbjct: 134 TANEGIMITGPDGTIEAVNTAFTRITGFSLDEAIGKKPNIL----------KSGRHEN-- 181

Query: 356 NLPDMFAEGREAWDAALHRLGTGAPPAPFEVRVRRDDGQTV--WLSLALWPVDSVPEEDG 413
              D +   R+ W A L    TG      EV  RR  G+    WLS+A     +V +  G
Sbjct: 182 ---DFY---RDMWRAILE---TGQWQG--EVWNRRRTGEVFIEWLSIA-----TVRDAFG 225

Query: 414 PPPAVEGMAHDITAHKLAEMDLTRRIVTDPLTGLFNRAHMEDMLPRMLTRAAEDGRTLGL 473
               + G+  DITA K  E  + R+   D LTGL NR+   D L + +  A  D     L
Sbjct: 226 EVSHMLGIFSDITARKEDEEQVWRQANFDALTGLPNRSLFLDRLGQAVKAAKRDKTRFAL 285

Query: 474 LFIDLDGFKAVNDTYGHAVGDTLLQQVAGRLRRRLRHTDIAIRLGGDEFAVLLWDVAGKE 533
           LFIDLDGFK VNDT+GHAVGD LLQ+ A RL   +R +D   RL GDEF V+L DV GK+
Sbjct: 286 LFIDLDGFKKVNDTFGHAVGDLLLQEAAARLLLSVRSSDTVARLSGDEFTVILHDVEGKD 345

Query: 534 AVERIGAGILSIMAPAFTCTDIPCSVSASIGASLYPQHADDAPSLLRLADEAMYRAKAEG 593
            +  + A ++S +A  F       +V AS+G +++P  ADDA  L+RLAD AMY  K  G
Sbjct: 346 EIGNVAAKVVSRLAEPFELDGHDANVQASVGIAIFPDDADDAAMLIRLADRAMYTVKGAG 405

Query: 594 KNRMAF 599
           KN   F
Sbjct: 406 KNNFGF 411



 Score = 50.4 bits (119), Expect = 1e-10
 Identities = 56/246 (22%), Positives = 103/246 (41%), Gaps = 11/246 (4%)

Query: 43  LFDDLPVGVFRSTLDGEHLLYANTSLAHLFGWPDAGAMIEGQTPRDLYASPTARDDILQR 102
           + +D P+GV  S      +++AN +   L G P    +  G   RD Y     R  +++ 
Sbjct: 12  VLEDSPIGVSISRRRDGVIVFANHTFCDLIGVPRVTVL--GSKARDYYVDDHQRATVIKH 69

Query: 103 LQQAGEMTTDVIHLQRPGHAQRACILHLR--IDNAMKTIEGWVMDVTELDHRKEGLRDAH 160
           +++ G +    +  +R   A    +L +R  +         WV D+TE    +E L+ A 
Sbjct: 70  MKRHGSVDHAEVQFRRSDGAPFWTLLTIRESLFGTEPVNLAWVYDITERKTSEERLQLAA 129

Query: 161 RFLQNVVDALPCPLFFKDMNGAYTLFNHAFSDMLGLTPENLQGKNADDI-APPDLAAVYH 219
           +    VV+     +     +G     N AF+ + G + +   GK  + + +       Y 
Sbjct: 130 K----VVETANEGIMITGPDGTIEAVNTAFTRITGFSLDEAIGKKPNILKSGRHENDFYR 185

Query: 220 SMDQALLDAKGPASQRYESAFTTPHGLRHVLFDKATVVDDEGTARGLVGIITDITGRKQA 279
            M +A+L+      + +    T    +  +    ATV D  G    ++GI +DIT RK+ 
Sbjct: 186 DMWRAILETGQWQGEVWNRRRTGEVFIEWLSI--ATVRDAFGEVSHMLGIFSDITARKED 243

Query: 280 EDALRR 285
           E+ + R
Sbjct: 244 EEQVWR 249