Pairwise Alignments

Query, 607 a.a., sensory box/GGDEF domain protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 820 a.a., GGDEF domain-containing protein from Magnetospirillum magneticum AMB-1

 Score =  153 bits (387), Expect = 2e-41
 Identities = 161/576 (27%), Positives = 255/576 (44%), Gaps = 75/576 (13%)

Query: 43  LFDDLPVGVFRSTLDGEHLLYANTSLAHLFGWPDAGAMIEGQTPRDLYASPTARDDILQR 102
           L  DLP  ++     G   ++ + + A +FG+  +   + G     LYA P  R   ++R
Sbjct: 34  LLRDLPDVLYSVDAAGR-FIWVSPNAATVFGY--SAEELVGMEAAALYAKPEDRVGTVRR 90

Query: 103 LQQAG--EMTTDVIHLQRPGHAQRACILHLRI---DNAMKTIEGWVMDVTELDHRKEGLR 157
           ++ AG   + ++V   ++ G +  A I    +   +  +  I G + D+TE+   ++ L 
Sbjct: 91  IRDAGGRAVRSEVEMRRKDGISIWAAIYACALMDGEGRITGINGAIRDITEIWQTRKTLG 150

Query: 158 DAH---RFLQNVVDALPCPLF---FKDMNGAY-TLFNHAFSDMLGLTPENLQGKNADDIA 210
           D+    R L +V     C  F     DMN A+ TLF ++  ++L +          D I 
Sbjct: 151 DSEDRFRRLSDVATEAICIHFQGKIIDMNKAFETLFAYSRDELLTMWAW-------DVID 203

Query: 211 PPDLAAVYHSMDQALLDAKGPASQRYESAFTTPHGLRHVLFDKATVVDDEGTARGLVG-- 268
           P D++            AK   +Q+YE+    P+ +R +  D +    +  +    +G  
Sbjct: 204 PRDISL-----------AKSMVAQQYEA----PYEVRGIRKDGSVFPMEIHSKHSRMGGD 248

Query: 269 -----IITDITGRKQAEDALRRVEARIRALVHNASDGFFSVTPEGYITESNPAMCKLLGL 323
                 I D+T  K+AE ++R +       V  +      V  +G +   N A   L G 
Sbjct: 249 SVRVTSIRDLTQSKKAEASVRLLSQA----VEQSPVAVAVVGGDGMVQYVNSAHASLTGH 304

Query: 324 KVAPSSGERGELTCVAPDDDESSDANRAQNILNLPDMFAEGREAWDAALHRLGTGAPPAP 383
             +   G+   L+ + P         +A  +L          + W   L     G     
Sbjct: 305 SSSAVVGK--PLSALYP--------GKAGAMLG---------DFWRTLL-----GQGELQ 340

Query: 384 FEVRVRRDDGQTVWLSLALWPVDSVPEEDGPPPAVEGMAHDITAHKLAEMDLTRRIVTDP 443
            E++V R DG   W  +    V + P E+G    ++    D+T  K  E  L  + + D 
Sbjct: 341 GELQVNRQDGTWQWQQVHGSKV-ATPGEEGTHYLLQ--IEDVTLRKDQERRLQHQALFDG 397

Query: 444 LTGLFNRAHMEDMLPRMLTRAAEDGRTLGLLFIDLDGFKAVNDTYGHAVGDTLLQQVAGR 503
           LT L NR H  D L R +  A + GR +GLLF+DLDGFKA+ND+ GH  GD LL   A R
Sbjct: 398 LTDLPNRVHALDRLAREIDMARDHGRKVGLLFVDLDGFKAINDSLGHEYGDELLVLAAER 457

Query: 504 LRRRLRHTDIAIRLGGDEFAVLLWDVAGKEAVERIGAGILSIMAPAFTCTDIPCSVSASI 563
           LR+      +  R GGDEF V++ D+    A   + A I+   +  FT +      +ASI
Sbjct: 458 LRQAAGDGGVVARFGGDEFLVIMGDMEDGAAAGEVAAAIVDRFSQPFTISRRDLISTASI 517

Query: 564 GASLYPQHADDAPSLLRLADEAMYRAKAEGKNRMAF 599
           G +LYP+      +LLR AD AMY+AK  G+NR  F
Sbjct: 518 GLALYPEDGRTQQTLLRNADIAMYQAKLAGRNRFCF 553



 Score = 25.8 bits (55), Expect = 0.008
 Identities = 32/153 (20%), Positives = 52/153 (33%), Gaps = 28/153 (18%)

Query: 275 GRKQAEDALRRVEARIRA-LVHNASDGFFSVTPEGYITESNPAMCKLLGLKVAPSSGERG 333
           G   AE A  R+ A + A L+ +  D  +SV   G     +P    + G       G   
Sbjct: 15  GLHAAEAAGERIPAGLHAALLRDLPDVLYSVDAAGRFIWVSPNAATVFGYSAEELVGMEA 74

Query: 334 ELTCVAPDDDESSDANRAQNILNLPDMFAEGREAWDAALHRLGTGAPPAPFEVRVRRDDG 393
                 P+D       R   +  + D                  G      EV +RR DG
Sbjct: 75  AALYAKPED-------RVGTVRRIRD-----------------AGGRAVRSEVEMRRKDG 110

Query: 394 QTVWLSLALWPVDSVPEEDGPPPAVEGMAHDIT 426
            ++W ++      ++ + +G    + G   DIT
Sbjct: 111 ISIWAAIY---ACALMDGEGRITGINGAIRDIT 140