Pairwise Alignments

Query, 607 a.a., sensory box/GGDEF domain protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 810 a.a., PAS domain S-box/diguanylate cyclase (GGDEF) domain from Kangiella aquimarina DSM 16071

 Score =  136 bits (342), Expect = 4e-36
 Identities = 109/335 (32%), Positives = 151/335 (45%), Gaps = 27/335 (8%)

Query: 258 DDEGTARGLVGIITDITGRKQAEDALRRVEARIRALVHNASDGFFSVTPEGYITESNPAM 317
           DD+G A   +G I  I    + E ALRR +   R LV N+ D          +T  +P++
Sbjct: 222 DDKGNAIIEIGSIHQIQKDFETEYALRRKDKYYRTLVENSYDCILMYDQNMNVTYISPSV 281

Query: 318 CKLLGLKVAPSSGERGELTCVAPDDDESSDANRAQNILNLPDMFAEGREAWDAALHRLGT 377
            ++ G       G+  + T +  +D E + AN            AE   A          
Sbjct: 282 TRVTGYTEQDLVGKTLD-TFIYEEDREEAAANLR--------YVAENPGALSVV------ 326

Query: 378 GAPPAPFEVRVRRDDGQTVWLSLALWPVDSVPEEDGPPPAVEGMAHDITAHKLAEMDLTR 437
                  E R+   DG  +W+   L    + P+  G    V    H IT  K AE  +  
Sbjct: 327 -------ERRINHKDGHVLWIESRLVNHLNDPDIQG----VTVNFHVITERKQAERKIHN 375

Query: 438 RIVTDPLTGLFNRAHMEDMLPRMLTRAAEDGRTLGLLFIDLDGFKAVNDTYGHAVGDTLL 497
               DPLT L NR  +   L + L  + ++   L L++IDLD FK +NDT GH+VGD LL
Sbjct: 376 LANYDPLTQLPNRYLLRKRLLKGLADSVKNDSKLALMYIDLDRFKEINDTLGHSVGDALL 435

Query: 498 QQVAGRLRRRLRHTDIAIRLGGDEFAVLLWDVAGKEAVERIGAGILSIMAPAFTCTDIPC 557
           Q VA  + + LR +D   R+GGDEF ++L + + KEA   I   IL      F       
Sbjct: 436 QTVAKTIHKCLRSSDTLARVGGDEFTIVLPETSEKEA-RHIADRILQQFRTPFQADSHTV 494

Query: 558 SVSASIGASLYPQHADDAPSLLRLADEAMYRAKAE 592
              ASIG S++P H+  A  L R AD AMY AK E
Sbjct: 495 QTGASIGISIFPDHSKKAEDLFRFADIAMYSAKKE 529