Pairwise Alignments

Query, 1121 a.a., ATP-dependent RNA helicase, DEAD/DEAH box family (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 826 a.a., DEAD/DEAH box helicase from Pseudomonas simiae WCS417

 Score = 82.4 bits (202), Expect = 1e-19
 Identities = 111/406 (27%), Positives = 170/406 (41%), Gaps = 53/406 (13%)

Query: 134 YSHQARATDIIRAGRDVVVATPTASGKTFIYNLPVLEQFL---------RDPDAR---AI 181
           ++ Q      +++G+  ++   T +GKT+      L +F          R P A     +
Sbjct: 20  FAFQKEVWAAVKSGQSGLLHASTGAGKTYALWFAALNRFAIARPPVTAKRKPPAEPLTVL 79

Query: 182 YLFPLKALAQDQL----ATFNALTAHWPRDARPAAAIYDGDTTDHFRRKIRNAPPPVLLT 237
           ++ P++ALA D      A   AL   W      +  +  GDT+   R +     P VL+T
Sbjct: 80  WITPMRALAADTARALEAPLEALQIPW------SVGLRTGDTSSSERARQTRRQPTVLVT 133

Query: 238 NPEMLHLALLPHHEQWASLFASLTHVVVDEVHTYRG-VLGAHMAQVFRRLRRVCERYGAQ 296
            PE L L +L   +   SL A L  VVVDE H   G   G  +     RLRR        
Sbjct: 134 TPESLTL-MLARADSEVSL-AHLRMVVVDEWHELIGNKRGVQLQLALARLRRW------H 185

Query: 297 PSFVF--CSATVGNPGELAHNLTGLTPEVVTESGAPQGKRHFIF---LDP--EESPATAA 349
           P  +    SAT+GN    AH L  L P+    +   Q  +  I    L P  E  P    
Sbjct: 186 PDLMVWGISATLGNQ---AHALEVLVPQGDGINVQGQTAKQLIIDTLLPPVTERFPWAGH 242

Query: 350 IQL-----LRSALKRGLRTIVYCQSRRMTELVSLW--AAEKSGPYRDRISAYRAGFLPEE 402
           I L     + + +      +V+  +R  +E+   W  A   + P    + A   G L  E
Sbjct: 243 IGLKMLPQVVAEVDASSSCLVFTNTRAQSEI---WFQALLDARPDWAGVIALHHGSLSRE 299

Query: 403 RRD-VEARMASGQLLAVITTSALELGIDIGSLDLCILVGYPGTVMSTLQRGGRVGRARQE 461
            RD VE  +  GQL AV+ TS+L+LG+D   ++  + +G    V   +QR GR G A   
Sbjct: 300 TRDWVERALKDGQLKAVVCTSSLDLGVDFLPVERVLQIGSAKGVARLMQRAGRSGHAPGR 359

Query: 462 SAVVLVAGEDALDQYFMRHPEDFFARGAEHAVLNPDNPV-ILARHL 506
            + V +    +L+       +D  A+    A  +P  P+ +L +HL
Sbjct: 360 PSRVTLVPTHSLELVEAAAAQDAIAQRRIEARESPYKPLDVLVQHL 405