Pairwise Alignments

Query, 1121 a.a., ATP-dependent RNA helicase, DEAD/DEAH box family (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 816 a.a., ATP-dependent helicase, DEAD box family from Pseudomonas putida KT2440

 Score = 77.4 bits (189), Expect = 4e-18
 Identities = 134/557 (24%), Positives = 208/557 (37%), Gaps = 81/557 (14%)

Query: 134 YSHQARATDIIRAGRDVVVATPTASGKTFIYNLPVLEQFLRDPDAR------AIYLFPLK 187
           ++ Q R    +  G   ++   T +GKT+   L  L  F   P  R       +++ P++
Sbjct: 20  FAFQRRVWAAVERGESGLLHASTGAGKTYAVWLAALRAFKPRPQGRHLAPIQVLWVTPMR 79

Query: 188 ALAQDQLATFNALTAHWPRDARP-AAAIYDGDTTDHFRRKIRNAPPPVLLTNPEMLHLAL 246
           ALA D   T  AL A       P +  +  GDT    R +     P VL+T PE L L L
Sbjct: 80  ALAAD---TARALQAPLDELQLPWSVGVRSGDTNSAERARQARRLPSVLITTPESLTLLL 136

Query: 247 LPHHEQWASLFASLTHVVVDEVHTYRGVLGAHMAQVFRRLRRVCERYGAQPSFVFCSATV 306
                +    FA+L  VVVDE H   G       Q+   L R+   +   P++   SAT+
Sbjct: 137 T--RAKAREDFATLQLVVVDEWHELLG--NKRGVQLQLALARLRHWHPGLPTWGL-SATL 191

Query: 307 GNPGELAHNLTGLTPEVVTESGAPQGKRHFIFLDPEESPATAAIQLLRSALKR------- 359
           GN   L H    L          PQG    + +   +  A     LL  A++R       
Sbjct: 192 GN---LQHARDVL---------LPQGG---LLVQGRQDKALQVDTLLPKAIERFPWAGHM 236

Query: 360 GLR--------------TIVYCQSRRMTELVSLWAAEKSGPYRDRISAYRAGFLPEERRD 405
           GL+              ++V+  +R   E+      E    +   I+ + A    + R  
Sbjct: 237 GLKMLDQVCHEIDASASSLVFTNTRAQAEIWYQALLEARPDWAGLIALHHASLARDTRDW 296

Query: 406 VEARMASGQLLAVITTSALELGIDIGSLDLCILVGYPGTVMSTLQRGGRVGRARQESAVV 465
           VE  +  G L AVI TS+L+LG+D   ++  + +G    +   +QR GR G A    + V
Sbjct: 297 VERSLKQGSLKAVICTSSLDLGVDFLPVERVLQIGSAKGIARLMQRAGRSGHAPGRRSRV 356

Query: 466 LVAGEDALDQYFMRHPEDFFARGAEHAVLNPDNPV-ILARHL-----------ECAAAEI 513
            +    +L+             G   A  +P   + +L +HL           E   AE+
Sbjct: 357 TLVPTHSLELVEAAAARQALLAGHIEARFSPRLCMDVLVQHLVSMALGSGFRPEQLLAEV 416

Query: 514 PLSAADPWLASPGASEAVQRLEREGLLL----------RSADGSTLLASRKRPQRH---- 559
             + A   L       A+  +   G  L          R ADG   + S +  +RH    
Sbjct: 417 RSTWAFRQLRDSQWQWALDFVCHGGSSLTAYPDYQRVERQADGVYRVTSERLARRHRMGI 476

Query: 560 ---VDLRGSGSTYTIEDGEGHIIGSVDGHRALRETHPGAVYLHRGRTWVVQQLDPGARKV 616
              V        Y  + G G  +GSV+    +    PG   +  GR   + +++     V
Sbjct: 477 GTIVSDANLQLKYWSKGGGGKTLGSVE-EAFIARLRPGDTLVFAGRVLELVRVENMTAYV 535

Query: 617 MASPARVGWYTRVRGNK 633
             S AR     R  G +
Sbjct: 536 RRSTARKAAVARWNGGR 552