Pairwise Alignments

Query, 1121 a.a., ATP-dependent RNA helicase, DEAD/DEAH box family (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 1434 a.a., putative ATP-dependent DNA helicase lhr from Pseudomonas putida KT2440

 Score =  130 bits (328), Expect = 6e-34
 Identities = 108/359 (30%), Positives = 170/359 (47%), Gaps = 39/359 (10%)

Query: 127 RQGIADLYSHQARATDIIRAGRDVVVATPTASGKTFIYNLPVLEQFLRD---------PD 177
           R+  A +   QA+A  +I AG+ +++A PT SGKT    L VL++ LR+           
Sbjct: 23  RRHFATVTDAQAQAWPLIHAGQSMLLAAPTGSGKTLSAFLAVLDELLREGMKHQGELPAQ 82

Query: 178 ARAIYLFPLKALAQDQLATFNA--------LTAHWPRDARPAAAIYDGDTTDHFRRKIRN 229
              IY+ PLKAL+ D      A        +        R   A+  GDT    R  +R 
Sbjct: 83  TLVIYVSPLKALSNDIRLNLQAPLEGISQAIAEQGLNAPRITTAVRTGDTPQKERAAMRK 142

Query: 230 APPPVLLTNPEMLHLALLPHHEQWASLFASLTHV---VVDEVHTYRG-VLGAHMAQVFRR 285
             P +L+T PE L++ +       AS    L HV   +VDE+H   G   GAH+A    R
Sbjct: 143 LAPHILVTTPESLYVLMGS-----ASGREGLAHVHTVIVDEIHALAGNKRGAHLALTLER 197

Query: 286 LRRVCERYGAQPSFVFCSATVGNPGELAHNLTGL-TPEVVTESGAPQGKRHFIFLDPEES 344
           L+ +C++   +   +  SAT      +A  L G   P  + + G  + +   I + P   
Sbjct: 198 LQALCKKPLRR---IGLSATQRPVERVAQFLVGSGRPCAIVDIGHARKRDLAIEVPPVPL 254

Query: 345 PATAAIQL-------LRSALKRGLRTIVYCQSRRMTELVSLWAAEKSGPYRDRISAYRAG 397
            A  AI +       L +  +    T+V+  +RR+ E ++   +++ G  ++ ++A+   
Sbjct: 255 GAVMAIDVWGLVYDRLATLAREHRTTLVFVNTRRLAERITRHLSDRLG--KEAVAAHHGS 312

Query: 398 FLPEERRDVEARMASGQLLAVITTSALELGIDIGSLDLCILVGYPGTVMSTLQRGGRVG 456
                R D E R+ SGQL  ++ T++LELGIDIG +DL   V  PG++ + LQR GR G
Sbjct: 313 LSKALRLDAEQRLKSGQLQVLVATASLELGIDIGDIDLVCQVASPGSIAAFLQRVGRAG 371