Pairwise Alignments

Query, 325 a.a., oligopeptide/dipeptide ABC transporter, permease protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 336 a.a., dipeptide ABC transporter - putative membrane subunit from Pseudomonas putida KT2440

 Score =  204 bits (520), Expect = 2e-57
 Identities = 130/333 (39%), Positives = 181/333 (54%), Gaps = 13/333 (3%)

Query: 1   MFAFIIRRVAQALLVMFIISLLGFA-IKYSFGDPTREMMGVSVSVKEREA-LREELGLND 58
           M +FI RR+   +   F I+LL FA I+   GDP   MMG      E  A   E LGLN 
Sbjct: 1   MLSFIARRLGLLIPTFFGITLLTFALIRLIPGDPVEVMMGERRVDPEMHAQAMERLGLNK 60

Query: 59  PFAVQWTRFASGALKGDLGISYFYRKPALDVILDKAPATLELVFVAACLIILISVPVGVY 118
           P  VQ+  +     +GDLG S   R+      L   PATLEL F A     ++ +  GV 
Sbjct: 61  PLPVQYLDYVGKLAQGDLGESLRTRESVWREFLTLFPATLELAFAALLFAGVVGLLAGVI 120

Query: 119 AACRPKDVLSRLFMGVSTIGVSVPVFLTAIFLIYIFSVNLGWLPSFGRGN------PEHV 172
           AA +   +     MG+S  G S+P+F   + LI  FSV+LGW P  GR +      P+  
Sbjct: 121 AALKRGSLFDHGVMGISLAGYSMPIFWWGLILIMFFSVSLGWTPVSGRIDLLYDIEPKTG 180

Query: 173 IGSWDTNLTTWAN-FK----HIILPGISLSSIMLPLFIRLIRAEMKEVLETEYVKFARAK 227
               DT L+     FK    H+ILP I L +I L +  R+ R+ M EVL  +Y++ ARAK
Sbjct: 181 FMLIDTLLSDEEGAFKDAVMHLILPAIVLGTIPLAVIARMTRSSMLEVLREDYIRTARAK 240

Query: 228 GLKTWRVIMVHAFKNTLLPVITVGGVQLGTMIAFTILTETVFQWQGMGFMFIDAVERADT 287
           GL   RV+ VH  +N L+PV+TV G+Q+GT++A  +LTET+F W G+G   I+A+   D 
Sbjct: 241 GLSPARVVFVHGLRNALIPVLTVFGLQVGTLLAGAVLTETIFSWPGIGKWLIEAIGARDY 300

Query: 288 SLLVAYLIFCGAIFVTVNTVVDIVYGLVNPMVR 320
            ++   ++    + + VN VVDI+YGL NP +R
Sbjct: 301 PVVQNGILLIACLVILVNFVVDILYGLANPRIR 333