Pairwise Alignments

Query, 306 a.a., oligopeptide/dipeptide ABC transporter, permease protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 310 a.a., oligopeptide ABC transporter permease from Agrobacterium fabrum C58

 Score =  188 bits (477), Expect = 2e-52
 Identities = 107/297 (36%), Positives = 172/297 (57%), Gaps = 19/297 (6%)

Query: 7   RFRKSYFLYS-FLRDPVAVGSFALLFILAVSAILAPLIAPHSPYDGATLDIMNAELPPAW 65
           R  ++Y ++  F  + +A+    ++  L   A+ A ++APH+P  G   D+ NA L    
Sbjct: 28  RLGRAYVIWRRFSENRLALLGLVIIIALLFVALFADVLAPHNPVQG---DLRNARL---- 80

Query: 66  KPEGTADFLLGTDNQGRDILSAMLYGMRVSLVIGLGAVALQSVIGIFVGLVSGYGSKRID 125
            P GTA +LLGTD+QGRDILS +++G R++L + L    + + IG+ VG VSGY    +D
Sbjct: 81  LPPGTAGYLLGTDDQGRDILSRLIHGSRLTLFVVLLVAIIAAPIGLIVGTVSGYAGGWVD 140

Query: 126 SILMRVADVQLSFSSYMVAIFFGAILQMVVGVGRYEEVAVPFLIFVIGLSEWPQIARTVR 185
           +ILMR+ D+ L+F   ++A      L +V  +G   E AV      I ++ WP  AR  R
Sbjct: 141 AILMRITDIFLAFPKLVLA------LALVAALGPGIENAV----LAIAVTSWPPYARIAR 190

Query: 186 ASVLAEKKKEYVEAARVIGLPARRIMLRHILPNTLTPVLVISTVQVANAVMSEAALSFLG 245
           A  +  +  +++ A +++G    RI+L+H++P  L+ ++V  T+ +A  +++ A L FLG
Sbjct: 191 AETMTFRNSDFIAAVKLMGASPFRIVLKHVMPLCLSSLIVRVTLDMAGIILTAAGLGFLG 250

Query: 246 LGMPVTQPSLGSLIKSGFQYFFSGSWWITLFPGIMLILLVLSINLLGDWLRDFLNPK 302
           LG     P  G++I SG + F    WW+   PGI ++++ L  NLLGD LRD L+PK
Sbjct: 251 LGAQPPLPEWGAMIASG-RRFILDQWWVAAMPGIAILIVSLGFNLLGDGLRDALDPK 306