Pairwise Alignments

Query, 306 a.a., oligopeptide/dipeptide ABC transporter, permease protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 304 a.a., dipeptide ABC transporter permease from Agrobacterium fabrum C58

 Score =  199 bits (506), Expect = 7e-56
 Identities = 118/304 (38%), Positives = 181/304 (59%), Gaps = 20/304 (6%)

Query: 3   ALIRRFRKSYFLYSFLRDPVAVGSFALLFILAVSAILAPLIAPHSP---YDGATLDIMNA 59
           A IRR   + F + F ++  AV   A+  +L + A+ A +IAPH P   Y  A L     
Sbjct: 15  AAIRRRMIADFWFYFRQNRGAVIGLAVFILLVLIAVFAAVIAPHDPTQQYRDALL----- 69

Query: 60  ELPPAWKPEGTADFLLGTDNQGRDILSAMLYGMRVSLVIGLGAVALQSVIGIFVGLVSGY 119
            +PP W+  G A FLLGTD  GRD+LS ++YG + SL IG+  V++  V GI +GLV+G+
Sbjct: 70  -VPPVWQDGGRAAFLLGTDAVGRDMLSRLIYGAQYSLFIGVVVVSIALVGGIVIGLVAGF 128

Query: 120 GSKRIDSILMRVADVQLSFSSYMVAIFFGAILQMVVGVGRYEEVAVPFLIFVIGLSEWPQ 179
               +D+++MRV DV L+F S ++A+    +L  ++G G      +   +  I +   P 
Sbjct: 129 FGGWVDTVIMRVMDVILAFPSLLLAL----VLVAILGPG------LTNAMIAIAIVYQPH 178

Query: 180 IARTVRASVLAEKKKEYVEAARVIGLPARRIMLRHILPNTLTPVLVISTVQVANAVMSEA 239
            AR  RA+V++E ++EYV AARV G    R+M + ILPN L P++V +T+  ++AV+  A
Sbjct: 179 FARLTRAAVMSELRREYVTAARVAGAGNLRLMFKTILPNCLAPLIVQATLSFSSAVLDAA 238

Query: 240 ALSFLGLGMPVTQPSLGSLIKSGFQYFFSGSWWITLFPGIMLILLVLSINLLGDWLRDFL 299
           AL FLG+G        G+++    + F   +WW+   PG+ +++ VL+INL+GD LRD L
Sbjct: 239 ALGFLGMGAQPPASEWGTMLAEA-REFILRAWWVVTLPGLTILISVLAINLMGDGLRDAL 297

Query: 300 NPKL 303
           +PKL
Sbjct: 298 DPKL 301