Pairwise Alignments

Query, 386 a.a., DNA polymerase IV (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 352 a.a., DNA polymerase IV from Pseudomonas simiae WCS417

 Score =  187 bits (476), Expect = 3e-52
 Identities = 124/337 (36%), Positives = 181/337 (53%), Gaps = 12/337 (3%)

Query: 1   MHIDMDAFFASVEQLDDPSLRGRPVIVGGSSER-GVVSAASYEARRYGVRSAMPTVTARR 59
           +H+D D F+A++E  DDPSL  +P+ VGGS++R GV++  +YEAR YGVRSAM +  A +
Sbjct: 7   IHVDCDCFYAAIEMRDDPSLAQKPLAVGGSADRRGVIATCNYEARAYGVRSAMSSRHALK 66

Query: 60  LCPHGVFVSGRRHRYAEVSRMVMAVLHDFSPVVEQASVDEAYLDATGLERLFGPVDEMAQ 119
           LCP    V  R   Y E S+ +  +  D++ ++E  S+DEAYLD +      G    +AQ
Sbjct: 67  LCPDLTIVKPRMEAYKEASKEIQTIFRDYTDLIEPLSLDEAYLDVSDSSHFGGSATRIAQ 126

Query: 120 RLKGRVREATGGLTCSVGLAPVKFLAKIASDVNKPDGVFILPPEDVAAFLATLPVGRIPG 179
            ++ RV      +T S G+AP KFLAKIASD  KP+G+F++ P+ V  F++ L V ++ G
Sbjct: 127 DIRRRVSNQL-HITVSAGVAPNKFLAKIASDWKKPNGLFVITPDQVEDFVSQLRVSKLHG 185

Query: 180 VGKRMLESLDLLGVRTAGDVLRHPVSFWERRFGKGGLVLYDRARGIDPRPLEPWTPPKSE 239
           VGK   + L  LG+     +         R FG  G  L+  ARGID R ++  +  +S 
Sbjct: 186 VGKVTADKLARLGIEDCLQLREWNKLALVREFGSFGERLWSLARGIDDRVVQNDSRRQSI 245

Query: 240 SAEVTLAADTADRAVLRRWLLAQAERVGGSLRR---QGLAGRTITLKVKYADFRQLTRSR 296
           S E T   D  D +     L    E + G + R      AG+   +KVK+ DF Q T   
Sbjct: 246 SVENTYDVDLPDLSSCLAKLPELMETLAGRMARIDSSYRAGKPF-VKVKFHDFTQTTL-- 302

Query: 297 TLPEPVSATQTIFEEAWALLEALDLEAK-VRLVGLGV 332
              E   A + +      L +A +   K VRL+G+GV
Sbjct: 303 ---EQAGAGRDLESYQQLLTQAFNRGGKPVRLLGIGV 336