Pairwise Alignments

Query, 386 a.a., DNA polymerase IV (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 354 a.a., DNA polymerase IV from Pseudomonas putida KT2440

 Score =  193 bits (490), Expect = 7e-54
 Identities = 128/336 (38%), Positives = 182/336 (54%), Gaps = 10/336 (2%)

Query: 1   MHIDMDAFFASVEQLDDPSLRGRPVIVGGSSE-RGVVSAASYEARRYGVRSAMPTVTARR 59
           +H+D D F+A++E  DDP L GRP+ VGGS + RGV++  +YEAR YGVRSAM +  A +
Sbjct: 7   IHVDCDCFYAAIEMRDDPRLAGRPMAVGGSPDHRGVIATCNYEARAYGVRSAMSSRHALK 66

Query: 60  LCPHGVFVSGRRHRYAEVSRMVMAVLHDFSPVVEQASVDEAYLDATGLERLFGPVDEMAQ 119
           LCP  + V  R   Y E SR +  +  D++ ++E  S+DEAYLD +  +   G    +A+
Sbjct: 67  LCPDLLIVKPRFEAYREASREIHTIFRDYTELIEPLSLDEAYLDVSDSQWYSGSATRIAE 126

Query: 120 RLKGRVREATGGLTCSVGLAPVKFLAKIASDVNKPDGVFILPPEDVAAFLATLPVGRIPG 179
            ++ RV   T  +T S G+AP KFLAKIASD  KP+G+F++ P +V  F+A LPV R+ G
Sbjct: 127 DIRRRVAR-TLHITVSAGVAPNKFLAKIASDWRKPNGLFVITPNEVETFVAALPVARLHG 185

Query: 180 VGKRMLESLDLLGVRTAGDVLRHPVSFWERRFGKGGLVLYDRARGIDPRPLEPWTPPKSE 239
           VGK   + L  LG+ T   +         R FG  G  L+  ARGID R +   +  +S 
Sbjct: 186 VGKVTADKLTRLGIETCLHLREWSRLALVREFGSFGERLWGLARGIDERAVHNDSRRQSV 245

Query: 240 SAEVTLAADTADRAVLRRWLLAQAERVGGSLRRQGLAGRTIT--LKVKYADFRQLTRSRT 297
           S E T   D  D A     L    + +   + R   + R     +KVK+ DF     S+T
Sbjct: 246 SVENTYDTDLPDLASCLARLPELLDSLNERIARMDSSYRPDKPFVKVKFHDF-----SQT 300

Query: 298 LPEPVSATQTIFEEAWALLEALDLEAK-VRLVGLGV 332
             E   A + +      L +A     K VRL+G+GV
Sbjct: 301 TMEQAGAGRDLESYRQLLGQAFARGGKPVRLLGVGV 336