Pairwise Alignments

Query, 386 a.a., DNA polymerase IV (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 351 a.a., DNA polymerase IV from Escherichia coli BL21

 Score =  226 bits (576), Expect = 8e-64
 Identities = 143/364 (39%), Positives = 202/364 (55%), Gaps = 36/364 (9%)

Query: 1   MHIDMDAFFASVEQLDDPSLRGRPVIVGGSSER-GVVSAASYEARRYGVRSAMPTVTARR 59
           +H+DMD FFA+VE  D+P+LR  P+ +GGS ER GV+S A+Y AR++GVRSAMPT  A +
Sbjct: 5   IHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGMALK 64

Query: 60  LCPHGVFVSGRRHRYAEVSRMVMAVLHDFSPVVEQASVDEAYLDATGLERLFGPVDEMAQ 119
           LCPH   + GR   Y E S  +  +   ++  +E  S+DEAYLD T      G    +AQ
Sbjct: 65  LCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATLIAQ 124

Query: 120 RLKGRVREATGGLTCSVGLAPVKFLAKIASDVNKPDGVFILPPEDVAAFLATLPVGRIPG 179
            ++  +      LT S G+APVKFLAKIASD+NKP+G F++ P +V AFL TLP+ +IPG
Sbjct: 125 EIRQTIFNELQ-LTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPG 183

Query: 180 VGKRMLESLDLLGVRTAGDVLRHPVSFWERRFGKGGLVLYDRARGIDPRPLEPWTPPKSE 239
           VGK     L+ +G+RT GDV +  +    +RFGK G +L++R++GID R +      KS 
Sbjct: 184 VGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLRKSV 243

Query: 240 SAEVTLAAD----TADRAVLRRWLLAQAERVGGSLRRQGLAGRTITLKVKYADFRQLTRS 295
             E T+A D    +   A++ R L  + ER    ++   L  R   +K+K+ DF+Q T+ 
Sbjct: 244 GVERTMAEDIHHWSECEAIIER-LYPELERRLAKVKPDLLIARQ-GVKLKFDDFQQTTQ- 300

Query: 296 RTLPEPVSATQTIFEEAWALLEALDLEAK-------------VRLVGLGVSHFGGERQMS 342
                         E  W  L   DL A              VRLVGL V+    + +  
Sbjct: 301 --------------EHVWPRLNKADLIATARKTWDERRGGRGVRLVGLHVTLLDPQMERQ 346

Query: 343 LPIG 346
           L +G
Sbjct: 347 LVLG 350