Pairwise Alignments

Query, 1236 a.a., AcrB/AcrD/AcrF family protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 1027 a.a., multidrug transporter from Pseudomonas simiae WCS417

 Score =  381 bits (979), Expect = e-109
 Identities = 276/915 (30%), Positives = 453/915 (49%), Gaps = 58/915 (6%)

Query: 330  DARAALEAVAADRYSWRDLEAYTEKVRATLERLGSVGKVSRWGVRPETIFIDWSQERLAS 389
            D   AL A+ A+    R      E++R  L  L  V KV+  G + + +F+++S ERLA+
Sbjct: 140  DVYFALYALEAEHLPHRQQVQMAEELRQGLLNLPGVKKVNILGEQAQRVFVEFSYERLAT 199

Query: 390  LGLDPQQVAQTLAARNTSLPGGQLETRGRGVLLDSEGELRSATDLAEVMVATSASGAPLY 449
            LG+ P Q+   LAA+N   P G +ET G    +  +G   S + +  V +    +G  L 
Sbjct: 200  LGIKPDQIFAALAAQNAVAPSGFVETAGARAYIRIDGAFDSLSLIENVPL--EVNGRVLR 257

Query: 450  LRDVADVTRSYRAPVENLNHFVHRDADGTWRRGKAITLAVEMRSGEHIDAFSREVDAALG 509
            + +VA V+R Y  P    ++ +    D       A+ L V M    +     + + A   
Sbjct: 258  IANVATVSRGYEDPP---SYRIRHQGD------PALMLGVIMEKHWNGLELDKSLKAQEA 308

Query: 510  DLTQRLPEDLLVVRTSDQPRQVTEKVDLFTLS--LEEAVVLVVAVAFIGFREWRSALLMA 567
             +   LP  +   + SDQ + +   V+ F L   +  AVV+V+++  +GFR     L++A
Sbjct: 309  KIQADLPLGVNFAKVSDQAKNIRLAVNEFMLKFFVALAVVMVISLLALGFRV---GLVVA 365

Query: 568  LSIPLTLAMTFGMMHLLGIDLQQISIASLILALGLLVDDPVVAGDAIKREIAEGRPRRLA 627
             ++PLTL++ F +M L G +  +I++ +LI++LGLLVDD ++A + +  ++ EG  R  A
Sbjct: 366  AAVPLTLSVVFVIMLLTGREFDRITLGALIISLGLLVDDAIIAIEMMVVKLEEGFDRIHA 425

Query: 628  AWLGPTKLARAILYATITNIVAYLPFLLLTGDKGRFLYSMPIVVACSLVASRIVSMTFIP 687
            A    +  A  +L  T+  I+ +LP        G +  ++  +V  +L++S +V++ F P
Sbjct: 426  ATFAWSSTAAPMLTGTLVTIIGFLPVGFARSGAGEYAGNIFWIVGFALISSWLVAVVFTP 485

Query: 688  LLGSVLLDA-----GRREGTVEERRARGLGRLYYAVGGWAIDHRWKV---LAGSLLLVVA 739
             LG  LL       G  +     R  + L  L  A     +  RW V   + G+ +L VA
Sbjct: 486  YLGVKLLPQIKPVPGGHDAIYAGRYYQKLRSLVQA----CVRRRWLVTGLVVGAFVLCVA 541

Query: 740  GFWLQGQLKPQFFPK-DRSYLSYVDLWLPEDATVEATARVAADAARIVTDRVAAFDAETG 798
            G    G +K QFFP  DRS L  +++++P  +  ++T  VAA   + +            
Sbjct: 542  GM---GVVKKQFFPNSDRSEL-ILEVYMPPGSAFKSTEAVAARLEKALLQE--------- 588

Query: 799  RAAKGLPPALRSVTVFTGGGGPRFWFSVTPELRQPNYAQLLVEVSDNHLTKELIGPLQQA 858
                   P    V  + GGG PRF+ S+ PEL  P +A+L+V+  D+H    L   +++ 
Sbjct: 589  -------PQTTLVDTYVGGGAPRFFLSLNPELPDPAFAKLIVQTPDSHARDALKLRMRER 641

Query: 859  LSE-RLPSARADVMELENGPPIGVPVQLRLYGDDIPALRAESERLKAILRADPDATRVKD 917
            ++     SAR  V +L  GPP+  PV  R+ G ++  LR  SE ++ ++ A+   T  KD
Sbjct: 642  IAAGEFASARVRVTQLLFGPPVPFPVVFRVSGPNLDVLRGVSEDVRKVVAAN---TLTKD 698

Query: 918  ---NWGADTFVARLRVDPDKAALSGVTMLDVARATGNAATGTTVTALREGRLTVPVVSRL 974
               +WG  T   RL +D D+  L G T  +V        +G  +T +REG  TV VV+R 
Sbjct: 699  AFLDWGERTSGYRLVLDQDRLRLLGFTPNEVKSQLNALLSGNPITEVREGNRTVSVVARA 758

Query: 975  RPDERADATDVEGLYVAGQGGTRVPLAQIAEPEYGMETARIFRRNQQRCVVISCFPREGV 1034
            +  +R D  ++  + +    GT VPLAQ+   +  ME   + RRN+   V +     +GV
Sbjct: 759  QGGQREDLGNLNNMTLTNSAGTSVPLAQVGHFQAVMEEPILKRRNRATTVEVRADIIDGV 818

Query: 1035 LPSEVVARAMPAIGRFRADLPPGFRLEFGGEHEEQVKGFKELAGVMGISIAMIYMALLFQ 1094
             P +V       +    A LP G++++ GG  EE  K    LA +  I I +    ++FQ
Sbjct: 819  QPPDVEMAVYKDLQPLIAKLPAGYQIDIGGPVEESAKANVALAALFPIMILLTLTVIMFQ 878

Query: 1095 FRNAVKPLIVFAAIPYGMTGAFAALRLMGQPFGFMAFLGIASLIGVIVSHIIVLFDFIEE 1154
             R+     +VFA  P G+ GA   L L  QPFGF A LG+  + G+++ + ++  D I +
Sbjct: 879  VRSFGVMFMVFATAPLGLIGAVPTLLLFNQPFGFNAILGLIGIGGILMRNTLIFTDQIRQ 938

Query: 1155 KREEGEDLRTALLDAGIVRLRPVMITVAATVIALFPLALHGGALWEPLCYAQAGGLTVAT 1214
             ++ G  +  A+++A + R RPV++T  A  +A  PL L     W  L Y   GG+ V T
Sbjct: 939  NQDHGMPIHAAIIEATVRRARPVILTALAAALAFIPLTL--SVFWSSLAYVLIGGVLVGT 996

Query: 1215 FVTLLMVPVLYAIAV 1229
             +TLL +P L ++ +
Sbjct: 997  VLTLLFLPALCSLVL 1011



 Score = 56.2 bits (134), Expect = 1e-11
 Identities = 29/130 (22%), Positives = 71/130 (54%), Gaps = 8/130 (6%)

Query: 16  NSARFFVEQRHIGWVLLVATLVWGVWAWHAMPQRKDPEIPVRAAAVLVAWPGAPAERVEE 75
           N +   V+ R +   L++A L  G++++  + + +DP   V+   +  AWPGA A+ ++E
Sbjct: 5   NLSELAVKHRAVTLFLIIAILAAGIFSFGKLGRAEDPSFTVKVMTITAAWPGATAQEMQE 64

Query: 76  RITRRVEEAVGGNKWVEKIESVSRTGLSVVTLHLHERVAQTDTVLDDIGFRLQ-----EV 130
           ++  R+E+ +    + +++E++++ G   V++ +  + +   + + D+ ++ +     E 
Sbjct: 65  QVADRLEKRLQELDYYDRVETIAQPGF--VSMRMTYKESTRPSEIQDLFYQTRKKLSDEA 122

Query: 131 GQLPDGA-GP 139
            +LP G  GP
Sbjct: 123 AKLPQGVIGP 132