Pairwise Alignments

Query, 1236 a.a., AcrB/AcrD/AcrF family protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 1021 a.a., multidrug transporter AcrB from Pseudomonas simiae WCS417

 Score =  393 bits (1010), Expect = e-113
 Identities = 278/925 (30%), Positives = 447/925 (48%), Gaps = 50/925 (5%)

Query: 315  LHPDLWEPAVFASGDDARAALEAVAADRYSWRDLEAYTEKVRATLERLGSVGKVSRWGVR 374
            L PD+  P            + A+  D + +  L+ Y ++++  L+R+  VGKV   G++
Sbjct: 124  LPPDIQGPFFNDEFGTTFGNIYALTGDGFDYAVLKDYADRIQIQLQRVADVGKVELLGLQ 183

Query: 375  PETIFIDWSQERLASLGLDPQQVAQTLAARNTSLPGGQLETRGRGVLLDSEGELRSATDL 434
             E I+I+ S  +LA+LGL    V Q L  +N     G  ET    V L   G  ++  ++
Sbjct: 184  DEKIWIELSNLKLATLGLPLAAVQQALQEQNAVSTAGFFETPSERVQLRVSGNFKTVEEI 243

Query: 435  AEVMVATSASGAPLYLRDVADVTRSYRAPVENLNHFVHRDADGTWRRGKAITLAVEMRSG 494
                +          + DVAD+ R +  P      ++  DA G         LAV MR G
Sbjct: 244  RNFPIRVG--DRTFRIGDVADIHRGFNDPPAPRMRYMGADAIG---------LAVAMRDG 292

Query: 495  EHIDAFSREVDAALGDLTQRLPEDLLVVRTSDQPRQVTEKVDLFTLSLEEAVVLVVAVAF 554
              I    + ++     L + LP  + + + SDQP  V   V  F   L EA+ +V+ V+F
Sbjct: 293  GDILVLGKALEGEFARLQKNLPAGMELRKVSDQPAAVKTSVGEFVQVLAEALAIVLLVSF 352

Query: 555  IGFREWRSALLMALSIPLTLAMTFGMMHLLGIDLQQISIASLILALGLLVDDPVVAGDAI 614
                  R+ +++AL+IPL LAMTF  M+ LGI L +IS+ +L+LALGLLVDD ++A + +
Sbjct: 353  FSLGV-RTGMVVALAIPLVLAMTFATMYYLGIGLHKISLGALVLALGLLVDDAIIAVEMM 411

Query: 615  KREIAEGRPRRLAAWLGPTKLARAILYATITNIVAYLPFLLLTGDKGRFLYSMPIVVACS 674
              ++ +G  R  AA    T  A  +L  T+     +LP        G +  S+  VV  +
Sbjct: 412  AIKMEQGYDRLKAASFAWTSTAFPMLTGTLITAAGFLPIATAQSSTGEYTRSIFQVVTIA 471

Query: 675  LVASRIVSMTFIPLLGSVLL-------------DAGRREGTVEERRARGLGRLYYAVGGW 721
            L+AS + ++ F+P LG  LL             D     GT   +R R +         W
Sbjct: 472  LLASWVAAVVFVPYLGEKLLPDLAKIHAAKHGTDGPDPYGTPFYQRVRRMVE-------W 524

Query: 722  AIDHRWKVLAGSLLLVVAGFWLQGQLKPQFFPKDRSYLSYVDLWLPEDATVEATARVAAD 781
             +  R  V+  +LLL +    L   +  QFFP        VDL L E A++  TA     
Sbjct: 525  CVRRRKTVIVLTLLLFIGSVALFRFVPQQFFPASGRLELMVDLKLAEGASLSNTA----- 579

Query: 782  AARIVTDRVAAFDAETGRAAKGLPPALRSVTVFTGGGGPRFWFSVTPELRQPNYAQLLVE 841
                  D+V   +A     A      + +   + G G PRF+  +  +L   ++AQ +V 
Sbjct: 580  ------DQVKRLEALLKEHA-----GIDNYVAYVGTGSPRFYLPLDQQLPAASFAQFVVL 628

Query: 842  VSDNHLTKELIGPLQQALSERLPSARADVMELENGPPIGVPVQLRLYGDDIPALRAESER 901
                   + L   L Q L+E+ P  R+ V  LENGPP+G PVQ R+ G+ I  +RA + +
Sbjct: 629  AKTIEERESLRTWLIQTLNEQFPDLRSRVTRLENGPPVGYPVQFRVTGEHIEEVRALARK 688

Query: 902  LKAILRADPDATRVKDNWGADTFVARLRVDPDKAALSGVTMLDVARATGNAATGTTVTAL 961
            +   +R +P    V  +W   + +  L +D D+A   GV+  ++++   ++ TG++V+  
Sbjct: 689  VAVKVRENPHVANVHLDWEEPSKIVYLNIDQDRARALGVSTANLSKFLQSSLTGSSVSQY 748

Query: 962  REGRLTVPVVSRLRPDERADATDVEGLYVAGQGGTRVPLAQIAEPEYGMETARIFRRNQQ 1021
            RE    + ++ R    ER + + +  L V    G  V L+QIA  EYG E   I+ RN+ 
Sbjct: 749  REDNELIEILLRGTVHERTELSLLPSLAVPTDNGKSVALSQIATLEYGFEEGIIWHRNRL 808

Query: 1022 RCVVISCFPREGVLPSEVVARAMPAIGRFRADLPPGFRLEFGGEHEEQVKGFKELAGVMG 1081
              V I         P+ +V + +P +   RA+LP G+ L+ GG  E+  +G   +   + 
Sbjct: 809  PTVTIRADIYGKEQPATLVQQILPTLEGVRAELPDGYLLDVGGTVEDSARGQNSVKAGVP 868

Query: 1082 ISIAMIYMALLFQFRNAVKPLIVFAAIPYGMTGAFAALRLMGQPFGFMAFLGIASLIGVI 1141
            + I ++   L+ Q R+  +  +VF   P G+ G    L +  QPFGF+A LG  +L G+I
Sbjct: 869  LFIVVVLTLLMLQLRSFSRTAMVFLTAPLGLIGVTLFLLVFRQPFGFVAMLGTIALSGMI 928

Query: 1142 VSHIIVLFDFIEEKREEGEDLRTALLDAGIVRLRPVMITVAATVIALFPLALHGGALWEP 1201
            + + ++L D IE+  + G     A+++A + R RP+++T  A V+A+ PL+      + P
Sbjct: 929  MRNSVILVDQIEQDIKAGLAPWQAIIEATVRRFRPIVLTALAAVLAMIPLS--RSVFFGP 986

Query: 1202 LCYAQAGGLTVATFVTLLMVPVLYA 1226
            +  A  GGL VAT +TLL +P LYA
Sbjct: 987  MAVAIMGGLIVATALTLLFLPALYA 1011



 Score = 55.1 bits (131), Expect = 3e-11
 Identities = 38/138 (27%), Positives = 66/138 (47%), Gaps = 5/138 (3%)

Query: 16  NSARFFVEQRHIGWVLLVATLVWGVWAWHAMPQRKDPEIPVRAAAVLVAWPGAPAERVEE 75
           N + + +  R I   L++   V G  ++  + Q +DP    +A  +   WPGA A+ V  
Sbjct: 4   NLSEWALRNRQIVLFLMILLAVVGTLSYSKLGQSEDPPFTFKAMVIKTNWPGATAQEVSR 63

Query: 76  RITRRVEEAVGGNKWVEKIESVSRTGLSVVTLHLHERV--AQTDTVLDDIGFRLQEVGQL 133
           ++T R+E+ +      E+I S SR G S VT    + +  AQ   +   +  ++ ++ Q 
Sbjct: 64  QVTERIEKKLMETGEYERIVSFSRPGESQVTFIARDSMHSAQIPELWYQVRKKISDIRQT 123

Query: 134 --PDGAGPLTYIKDFGDT 149
             PD  GP  +  +FG T
Sbjct: 124 LPPDIQGPF-FNDEFGTT 140