Pairwise Alignments

Query, 1236 a.a., AcrB/AcrD/AcrF family protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 1052 a.a., RND efflux system, inner membrane transporter from Variovorax sp. SCN45

 Score =  457 bits (1176), Expect = e-132
 Identities = 292/916 (31%), Positives = 461/916 (50%), Gaps = 45/916 (4%)

Query: 330  DARAALEAVAADRYSWRDLEAYTEKVRATLERLGSVGKVSRWGVRPETIFIDWSQERLAS 389
            D    + A+ ++ +S+ +L+   + VR  L R+  V KV ++GV+ E ++I+ SQ+RLA 
Sbjct: 151  DVYGVIYALESEGFSYAELKTLADDVRQQLLRVKDVAKVDQFGVQDEKVYIEISQKRLAQ 210

Query: 390  LGLDPQQVAQTLAARNTSLPGGQLETRGRGVLLDSEGELRSATDLAEVMVATSASGAPLY 449
            LGLD   V Q L ++N     G + +    V +   G+  S   L ++ +  S SG+ + 
Sbjct: 211  LGLDFNAVLQQLGSQNAVESAGSISSPQDVVQVRVAGQFTSVDQLRDMPIRGS-SGSQIK 269

Query: 450  LRDVADVTRSYRAPVENLNHFVHRDADGTWRRGKAITLAVEMRSGEHIDAFSREVDAALG 509
            L D+AD+ R Y  P     H   ++          I L V M  G  I A  + + A   
Sbjct: 270  LGDIADIHRGYVDPPAVKVHHQGKEV---------IALGVSMAKGGDIIALGKALKATTA 320

Query: 510  DLTQRLPEDLLVVRTSDQPRQVTEKVDLFTLSLEEAVVLVVAVAFIG-----------FR 558
             + +RLP  + + +  DQP  V   V+ F   L EAV +V+AV+ I            + 
Sbjct: 321  TIDKRLPAGVKLAQVQDQPVSVASSVNEFVGVLIEAVAIVLAVSIISLGLHKGGRFGWYI 380

Query: 559  EWRSALLMALSIPLTLAMTFGMMHLLGIDLQQISIASLILALGLLVDDPVVAGDAIKREI 618
            + R  L++A++IPL LA+TF  M+  GI L +IS+ SLI+ALGLLVDD ++A + + R++
Sbjct: 381  DMRPGLVVAITIPLVLAVTFLAMNYFGIGLHKISLGSLIIALGLLVDDAIIAVEMMVRKM 440

Query: 619  AEGRPRRLAAWLGPTKLARAILYATITNIVAYLPFLLLTGDKGRFLYSMPIVVACSLVAS 678
             EG  +  AA       A+ +L  T+     +LP  L     G + +++  V   +LV S
Sbjct: 441  EEGYDKARAATYAYDVTAKPMLTGTLITAAGFLPIGLAKSVTGEYTFAIFAVTVIALVLS 500

Query: 679  RIVSMTFIPLLGSVLLD--AGRREGTVEERRARGLGRLYYAVGGWAIDHRWKVLAGSLLL 736
             IVS+ F+P LG++LL   A   +    E         +     W ++HRW  +  ++L+
Sbjct: 501  WIVSVYFVPYLGTLLLKVKAHDPDAPPHEMFDSAFYNAFRRAVNWCVEHRWATIGATVLI 560

Query: 737  VVAGFWLQGQLKPQFFPKDRSYLSYVDLWLPEDATVEATARVAADAARIVTDRVAAFDAE 796
               G    G+++ QFFP        VD+W PE  +  A   VA    +        F  E
Sbjct: 561  FALGIVGMGKVQQQFFPDSSRPEILVDIWFPEGTSFAANEEVAKRVEK-------RFMEE 613

Query: 797  TGRAAKGLPPALRSVTVFTGGGGPRFWFSVTPELRQPNYAQLLVEVSDNHLTKELIGPLQ 856
             G         + +V+ + G G PRF+  +     Q N +QL+V   D  + + L   L 
Sbjct: 614  AG---------VSTVSTWIGSGVPRFYLPLDQVFPQTNVSQLIVLAKDLKVRETLRLKLP 664

Query: 857  QALSERLPSARADVMELENGPPIGVPVQLRLYGDDIPALRAESERLKAILRADPDATRVK 916
            Q L++  P  R  V  L NGPP+  PVQ R+ G D   LR  ++ +KA+LR +P+   V 
Sbjct: 665  QLLAQEFPEVRGRVKLLPNGPPVAYPVQFRVIGPDPALLRGHADEVKAVLRDNPNMRGVN 724

Query: 917  DNWGADTFVARLRVDPDKAALSGVTMLDVARATGNAATGTTVTALREGRLTVPVVSRLRP 976
            DNW     V RL VD  KA   GVT   +A+A+    +GTTV   RE  L + +V R  P
Sbjct: 725  DNWNESVKVIRLEVDQAKARALGVTSQAIAQASKTMFSGTTVGQYRENDLLIDIVLRQAP 784

Query: 977  DERADATDVEGLYVAGQGGTRVPLAQIAEPEYGMETARIFRRNQQRCVVISCFPREGVLP 1036
            DER   +D+   Y+    G  +PL QIA+P +  E   ++R N+   + +     EG+  
Sbjct: 785  DERQAISDIGNAYIPTSSGRSIPLTQIAKPVFTWEPGVMWRENRDYAITVQGDVIEGLQG 844

Query: 1037 SEVVARAMPAIGRFRADLPP----GFRLEFGGEHEEQVKGFKELAGVMGISIAMIYMALL 1092
            + V  + +P +    A        G+R+E  G  EE  KG   +   + I + +++  L+
Sbjct: 845  ATVTTQLLPKLRELEAGWAAAGQGGYRVEVAGAAEESSKGSASIVAGVPIMLFLVFTLLM 904

Query: 1093 FQFRNAVKPLIVFAAIPYGMTGAFAALRLMGQPFGFMAFLGIASLIGVIVSHIIVLFDFI 1152
             Q  +  + L+VF   P G+ G   AL ++ +PFGF+A LG+ +L+G+I  + ++L D I
Sbjct: 905  LQLHSFSRSLLVFITGPMGIAGVAGALLVLNRPFGFVALLGVIALMGMIQRNAVILIDQI 964

Query: 1153 EEKREEGEDLRTALLDAGIVRLRPVMITVAATVIALFPLALHGGALWEPLCYAQAGGLTV 1212
            E  R  G     A++++ + RLRP+++T AA V+A+ PL+      W P+  A  GGL V
Sbjct: 965  EIDRAAGVPAWDAIVESAVRRLRPIVLTAAAAVLAMIPLS--RSVFWGPMAVAIMGGLIV 1022

Query: 1213 ATFVTLLMVPVLYAIA 1228
            AT +TLL +P +YA A
Sbjct: 1023 ATVLTLLALPAMYAAA 1038



 Score = 62.4 bits (150), Expect = 2e-13
 Identities = 46/175 (26%), Positives = 82/175 (46%), Gaps = 9/175 (5%)

Query: 16  NSARFFVEQRHIGWVLLVATLVWGVWAWHAMPQRKDPEIPVRAAAVLVAWPGAPAERVEE 75
           N +++ ++   +   L+V  +V G +A+  + Q +DP    RA  V   WPGA A++V E
Sbjct: 16  NLSKWALDHAPLTRYLMVVLMVLGAFAYFQLGQDEDPPFTFRAMVVKTYWPGATAQQVAE 75

Query: 76  RITRRVEEAVGGNKWVEKIESVSRTGLSVVTLHLHERVAQTD------TVLDDIGFRLQE 129
           ++T ++E  +    + +KI S S+ G S +  ++ +    T+      TV   IG     
Sbjct: 76  QVTDKLERTLQEAPYADKIRSYSKPGESQIIFNIKDSSKSTEVANVWYTVRKKIG---DM 132

Query: 130 VGQLPDGAGPLTYIKDFGDTSTLMLTVASPRVSGVELDMRAVGVARAVRALRNDA 184
              LP G     +  DFGD   ++  + S   S  EL   A  V + +  +++ A
Sbjct: 133 RATLPAGVQGPFFNDDFGDVYGVIYALESEGFSYAELKTLADDVRQQLLRVKDVA 187