Pairwise Alignments

Query, 1236 a.a., AcrB/AcrD/AcrF family protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 1017 a.a., RND efflux transporter from Pseudomonas putida KT2440

 Score =  414 bits (1064), Expect = e-119
 Identities = 267/897 (29%), Positives = 445/897 (49%), Gaps = 34/897 (3%)

Query: 330  DARAALEAVAADRYSWRDLEAYTEKVRATLERLGSVGKVSRWGVRPETIFIDWSQERLAS 389
            D   ++ A  AD  + R L  Y E+ RA +  + ++GK+   G + E +++++S  +LA+
Sbjct: 141  DVFGSIYAFTADGLTLRQLRDYVEQARAEVRDVPNIGKIELVGTQDEVLYLNFSTRKLAA 200

Query: 390  LGLDPQQVAQTLAARNTSLPGGQLETRGRGVLLDSEGELRSATDLAEVMVATSASGAPLY 449
            LG+D +QV Q L A+N   P G +E     + + + G+  S  DL  V +  +       
Sbjct: 201  LGIDQRQVMQALQAQNAVTPAGMIEAGPERISVRTSGQFASEKDLQTVNLRINDRF--FR 258

Query: 450  LRDVADVTRSYRAPVENLNHFVHRDADGTWRRGKAITLAVEMRSGEHIDAFSREVDAALG 509
            L D+AD+ R Y  P   +  +  + A G         LA+ M++G +I  F   +   + 
Sbjct: 259  LADIADIERGYVDPPSPMFRYNGQTAIG---------LAIGMKAGGNIQVFGAALKKRMD 309

Query: 510  DLTQRLPEDLLVVRTSDQPRQVTEKVDLFTLSLEEAVVLVVAVAFIGFREWRSALLMALS 569
             + Q LP  + V   SDQ   V + V  FT +L EAVV+V+AV+F+     R+ L++A S
Sbjct: 310  QVVQDLPVGVGVHTVSDQAVVVKQAVGGFTSALFEAVVIVLAVSFVSLGV-RAGLVVACS 368

Query: 570  IPLTLAMTFGMMHLLGIDLQQISIASLILALGLLVDDPVVAGDAIKREIAEGRPRRLAAW 629
            IPL LAM F  M   GI +Q+IS+ +LI+ALGLLVDD ++  + +   +  G  +  AA 
Sbjct: 369  IPLVLAMVFVFMEYSGITMQRISLGALIIALGLLVDDAMITVEVMVTRLEMGESKEQAAT 428

Query: 630  LGPTKLARAILYATITNIVAYLPFLLLTGDKGRFLYSMPIVVACSLVASRIVSMTFIPLL 689
               T  A  +L  T+  +  ++P  L     G + +++  V+A +L+ S +V++ F P+L
Sbjct: 429  FAYTSTAFPMLTGTLVTVAGFVPIGLNASSAGEYTFTLFAVIAVALIVSWVVAVFFAPVL 488

Query: 690  GSVLLDAGRREGTVEERRARGLGRLYYAVGGWAIDHRWKVLAGSLLLVVAGFWLQGQLKP 749
            G  +L   + +    E     +GR +     W + +RW  + G+++L     +    ++ 
Sbjct: 489  GVHILKGDKLKA--HEAEPGRVGRAFEGGLLWCMRNRWLTIIGTVVLFALAIFCMRFVQN 546

Query: 750  QFFPKDRSYLSYVDLWLPEDATVEATARVAAD-AARIVTDRVAAFDAETGRAAKGLPPAL 808
            QFFP        VDL LP++A++E T +V     ARI  D                 P L
Sbjct: 547  QFFPSSDRPEILVDLNLPQNASIEETRKVVDRFEARIKDD-----------------PDL 589

Query: 809  RSVTVFTGGGGPRFWFSVTPELRQPNYAQLLVEVSDNHLTKELIGPLQQALSERLPSARA 868
               + + G G  RF+  +  +L+ P YAQL++        + ++  LQ+ L E       
Sbjct: 590  VHWSTYIGQGAIRFYLPLDQQLQNPYYAQLVIVSKGFEERQAMMDRLQKILHEEFVGVGT 649

Query: 869  DVMELENGPPIGVPVQLRLYGDDIPALRAESERLKAILRADPDATRVKDNWGADTFVARL 928
            +V  LE GPP+G P+Q R+ G DI  +R  +  L  +L  +     +  +W     V R+
Sbjct: 650  NVQSLEMGPPVGRPIQYRVSGADIDQVRKHAIELATLLDQNEHIGEMIYDWNEPGKVLRV 709

Query: 929  RVDPDKAALSGVTMLDVARATGNAATGTTVTALREGRLTVPVVSRLRPDERADATDVEGL 988
             +  DKA   G++  DVA    +  +G  +T + +    V VV+R    ER     ++ L
Sbjct: 710  EIAQDKARQLGLSSEDVANVMNSIVSGVQITQVNDNIYLVDVVARAEDSERGSPDTLQNL 769

Query: 989  YVAGQGGTRVPLAQIAEPEYGMETARIFRRNQQRCVVISCFPREGVLPSEVVARAMPAIG 1048
             +    GT +PL   A   Y +E   ++RR+++  + I       + P+++VA+  P I 
Sbjct: 770  QILTPNGTSIPLLSFATVRYELEQPLVWRRDRKPTITIKASVNGEIQPTDLVAQLKPKID 829

Query: 1049 RFRADLPPGFRLEFGGEHEEQVKGFKELAGVMGISIAMIYMALLFQFRNAVKPLIVFAAI 1108
             F + LP GF +  GG  EE  K    +  V+ + + ++   L+ Q  +  K  +V +  
Sbjct: 830  EFASKLPVGFEVATGGTVEESAKAQGPIRKVIPLMLFLMATFLMIQLHSVQKLFLVVSVA 889

Query: 1109 PYGMTGAFAALRLMGQPFGFMAFLGIASLIGVIVSHIIVLFDFIEEKREEGEDLRTALLD 1168
            P G+ G   AL   G P GF+A LGI +L G+I+ + ++L   I+E   +G     A+++
Sbjct: 890  PLGLIGVVLALVPTGTPMGFVAILGILALAGIIIRNSVILVTQIDEFEAQGLSPWDAVVE 949

Query: 1169 AGIVRLRPVMITVAATVIALFPLALHGGALWEPLCYAQAGGLTVATFVTLLMVPVLY 1225
            A   R RP+++T AA  + + P+A      W P+ YA  GG+ VAT +TLL +P LY
Sbjct: 950  ATNHRRRPILLTAAAASLGMIPIARE--VFWGPMAYAMIGGIIVATLLTLLFLPALY 1004



 Score = 52.8 bits (125), Expect = 2e-10
 Identities = 30/138 (21%), Positives = 70/138 (50%), Gaps = 7/138 (5%)

Query: 16  NSARFFVEQRHIGWVLLVATLVWGVWAWHAMPQRKDPEIPVRAAAVLVAWPGAPAERVEE 75
           N + + ++ +   W L+  +L+ G++++  + + +DP   ++   +   WPGA  +    
Sbjct: 6   NLSDWALKHQSFVWYLMFVSLLMGIFSYFNLGREEDPSFTIKTMVIQTRWPGATQDETLY 65

Query: 76  RITRRVEEAVGGNKWVEKIESVSRTGLSVVTLHLHERVAQTDTVLDDIGF----RLQEV- 130
           ++T R+E+ +     ++  +S +R G S V ++L +     D  + DI +    ++Q++ 
Sbjct: 66  QVTDRIEKKLEELDSLDYTKSYTRPGESTVYVYLRDTTKAKD--IPDIWYQVRKKIQDIR 123

Query: 131 GQLPDGAGPLTYIKDFGD 148
           G+ P G     +  +FGD
Sbjct: 124 GEFPAGIQGPGFNDEFGD 141