Pairwise Alignments

Query, 1236 a.a., AcrB/AcrD/AcrF family protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 1030 a.a., RND efflux transporter from Pseudomonas putida KT2440

 Score =  390 bits (1002), Expect = e-112
 Identities = 276/957 (28%), Positives = 456/957 (47%), Gaps = 41/957 (4%)

Query: 279  HTEPGLVVLDVSTRHDAAALSARLAVFRAERVG---ANALHPDLWEPAVFASGDDARAAL 335
            +T PGL    VS +      + +   ++A +     A  +   +  P +     D   A+
Sbjct: 88   YTRPGLAFTMVSLQDKTPPSAVQEEFYQARKKAGDQAKLMPAGVIGPMLNDEFSDVTFAV 147

Query: 336  EAVAADRYSWRDLEAYTEKVRATLERLGSVGKVSRWGVRPETIFIDWSQERLASLGLDPQ 395
             A+ A     R L    E +R  L  +  V KV+  G + E IF+ +S +RLA+LG+ PQ
Sbjct: 148  YALKAKGEPQRQLVRDAETLRQQLLHVPGVKKVNIIGEQAERIFVSFSHDRLATLGITPQ 207

Query: 396  QVAQTLAARNTSLPGGQLETRGRGVLLDSEGELRSATDLAEVMVATSASGAPLYLRDVAD 455
             +   L  +N   P G +ET+G  V++  +G       + E  V   A G PL L DVAD
Sbjct: 208  DIFSALDNQNALSPSGSVETQGPQVVVRVDGAFDQLAKIRETPVV--AQGRPLKLSDVAD 265

Query: 456  VTRSYRAPVENLNHFVHRDADGTWRRGKAITLAVEMRSGEHIDAFSREVDAALGDLTQRL 515
            V R Y  P   L   V  D +       A+ L + MR G +     + ++A    + + +
Sbjct: 266  VERGYEDPATFL---VRNDGE------PALLLGIVMREGWNGLDLGKALEAETAKINEGM 316

Query: 516  PEDLLVVRTSDQPRQVTEKVDLFTLSLEEAVVLVVAVAFIGFREWRSALLMALSIPLTLA 575
            P  + + + +DQ   +T  VD F +    A+++V+ V F+    WR  +++A ++PLTLA
Sbjct: 317  PLGMTLSKVTDQAVNITSSVDEFMIKFFVALLVVMLVCFLSMG-WRVGVVVAAAVPLTLA 375

Query: 576  MTFGMMHLLGIDLQQISIASLILALGLLVDDPVVAGDAIKREIAEGRPRRLAAWLGPTKL 635
            + F +M   G +  +I++ SLILALGLLVDD ++A + +  ++ EG  R  A+    +  
Sbjct: 376  IVFVVMAATGKNFDRITLGSLILALGLLVDDAIIAIEMMVVKMEEGYDRIKASAYAWSHT 435

Query: 636  ARAILYATITNIVAYLPFLLLTGDKGRFLYSMPIVVACSLVASRIVSMTFIPLLGSVLLD 695
            A  +L  T+   + ++P        G +  +M  +V  +L+AS +V++ F P LG  LL 
Sbjct: 436  AAPMLSGTLVTAIGFMPNGFAQSTAGEYTSNMFWIVGIALIASWVVAVAFTPYLGVKLLP 495

Query: 696  AGRREGTVEERRARGLGRLYY----AVGGWAIDHRWKVLAGSLLLVVAGFWLQGQLKPQF 751
               R  T+E   A      +Y    A+ GW I H+W V    +   VA     G +K QF
Sbjct: 496  ---RIKTIEGGHAAIYNTRHYNRFRALLGWVIAHKWLVAGTVVSTFVAAVLGMGLVKKQF 552

Query: 752  FPKDRSYLSYVDLWLPEDATVEATARVAADAARIVTDRVAAFDAETGRAAKGLPPALRSV 811
            FP        V+L +P   ++E T   A      +  +  A                + V
Sbjct: 553  FPTSDRPEVLVELQMPYGTSIEQTNATAIKVESWLRQQEEA----------------KIV 596

Query: 812  TVFTGGGGPRFWFSVTPELRQPNYAQLLVEVSDNHLTKELIGPLQQALSERL-PSARADV 870
            T + G G PRF+ ++ PEL  P++A+++V   +    + L   L++A SE L P A+  V
Sbjct: 597  TTYIGQGPPRFFLAMAPELPDPSFAKIVVLTENQGAREALKHRLREAASEGLAPGAQVRV 656

Query: 871  MELENGPPIGVPVQLRLYGDDIPALRAESERLKAILRADPDATRVKDNWGADTFVARLRV 930
             +L  GP    PV  R+ G D   LR  + R++++L+A P    V  +WG         +
Sbjct: 657  TQLVFGPYSPYPVAYRVMGPDASQLRQIAARVQSVLQASPMMKTVNTDWGPLVPTLHFSL 716

Query: 931  DPDKAALSGVTMLDVARATGNAATGTTVTALREGRLTVPVVSRLRPDERADATDVEGLYV 990
            + D+    G+T   V++      TG  +T++RE   +V VV R     R D   +E   +
Sbjct: 717  NQDRLQSVGLTSASVSQQLQFLLTGVPITSVREDIRSVQVVGRAAGQIRLDPAQIENFTL 776

Query: 991  AGQGGTRVPLAQIAEPEYGMETARIFRRNQQRCVVISCFPREGVLPSEVVARAMPAIGRF 1050
             G  G RVP++QI +    ME   + RR++   + +     EG+ P +V       +   
Sbjct: 777  VGSNGQRVPVSQIGDVSIRMEDPILRRRDRTPTMTVRGDIAEGLQPPDVSTAIWKDLQPI 836

Query: 1051 RADLPPGFRLEFGGEHEEQVKGFKELAGVMGISIAMIYMALLFQFRNAVKPLIVFAAIPY 1110
               LP G+++E  G  EE  K  + +  ++ I IA+  + ++ Q R+    ++VF   P 
Sbjct: 837  VTQLPAGYKIEMAGSIEESAKASQAIVPLLPIMIALTLLIIILQVRSISAMVMVFLTSPL 896

Query: 1111 GMTGAFAALRLMGQPFGFMAFLGIASLIGVIVSHIIVLFDFIEEKREEGEDLRTALLDAG 1170
            G+ G    L L GQPFG  A +G+ +L G+++ + ++L   I+  + EG     A+++A 
Sbjct: 897  GLIGVVPVLLLFGQPFGINALVGLIALSGILMRNTLILIGQIDHNQLEGLAPFDAVVEAT 956

Query: 1171 IVRLRPVMITVAATVIALFPLALHGGALWEPLCYAQAGGLTVATFVTLLMVPVLYAI 1227
            + R RPV++T  A ++A  PL       W  L Y   GG  V T +TL+ +P +Y+I
Sbjct: 957  VQRARPVLLTALAAILAFIPLT--HSVFWGTLAYTLIGGTFVGTIMTLVFLPAMYSI 1011



 Score = 52.8 bits (125), Expect = 2e-10
 Identities = 24/97 (24%), Positives = 51/97 (52%)

Query: 16  NSARFFVEQRHIGWVLLVATLVWGVWAWHAMPQRKDPEIPVRAAAVLVAWPGAPAERVEE 75
           N +   V +R I   L+V     G  A+  + + +DP   V+   ++ AWPGA A+ +++
Sbjct: 7   NLSALAVRERSITLFLIVLIAFAGTLAFFKLGRAEDPPFTVKQMTIITAWPGATAQEMQD 66

Query: 76  RITRRVEEAVGGNKWVEKIESVSRTGLSVVTLHLHER 112
            +   +E+ +   +W ++ E+ +R GL+   + L ++
Sbjct: 67  LVAEPLEKRMQELRWYDRTETYTRPGLAFTMVSLQDK 103