Pairwise Alignments

Query, 1236 a.a., AcrB/AcrD/AcrF family protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 1021 a.a., RND efflux transporter from Pseudomonas putida KT2440

 Score =  383 bits (983), Expect = e-110
 Identities = 267/898 (29%), Positives = 434/898 (48%), Gaps = 38/898 (4%)

Query: 337  AVAADRYSWRDLEAYTEKVRATLERLGSVGKVSRWGVRPETIFIDWSQERLASLGLDPQQ 396
            A+  + + +  L+ Y ++++  L+R+  VGKV   G++ E ++I+ S  +LA+LG+  + 
Sbjct: 146  ALTGEGFDYAVLKDYADRIQIQLQRVKDVGKVDLIGLQDEKVWIELSNLKLATLGVPLEA 205

Query: 397  VAQTLAARNTSLPGGQLETRGRGVLLDSEGELRSATDLAEVMVATSASGAPLYLRDVADV 456
            V + L  +N     G  ET    + L   G   S   + +  +          + DVA+V
Sbjct: 206  VQKALQEQNAVSTAGFFETPSERLQLRVSGRFDSVEQIRQFPIRVG--DRTFRIGDVAEV 263

Query: 457  TRSYRAPVENLNHFVHRDADGTWRRGKAITLAVEMRSGEHIDAFSREVDAALGDLTQRLP 516
             R +  P      F+  DA G         LAV M+ G  I    + ++     L   LP
Sbjct: 264  HRGFNDPPAPRMRFMGEDAIG---------LAVSMKDGGDILVLGKALEGEFERLAHNLP 314

Query: 517  EDLLVVRTSDQPRQVTEKVDLFTLSLEEAVVLVVAVAFIGFREWRSALLMALSIPLTLAM 576
              + + + SDQP  V   V  F   L EA+V+V+ V+F      R+ L++AL+IPL LAM
Sbjct: 315  AGMALRKVSDQPAAVKAGVGEFVQVLVEALVIVLLVSFFSLG-LRTGLVVALAIPLVLAM 373

Query: 577  TFGMMHLLGIDLQQISIASLILALGLLVDDPVVAGDAIKREIAEGRPRRLAAWLGPTKLA 636
            TF  MH  GI L +IS+ +L+LALGLLVDD ++A + +  ++ +G  R  AA    T  A
Sbjct: 374  TFAAMHYFGIGLHKISLGALVLALGLLVDDAIIAVEMMAIKMEQGYDRLKAASYAWTSTA 433

Query: 637  RAILYATITNIVAYLPFLLLTGDKGRFLYSMPIVVACSLVASRIVSMTFIPLLGSVLLD- 695
              +L  T+     +LP        G +  S+  VV  +L+ S + ++ F+P LG  LL  
Sbjct: 434  FPMLTGTLITAAGFLPIATAASSTGEYTRSIFQVVTIALLTSWVAAVVFVPYLGERLLPD 493

Query: 696  -----AGR--REGTVEERRARGLGRLYYAVGGWAIDHRWKVLAGSLLLVVAGFWLQGQLK 748
                 A R  ++G   +  A    +    +  W +  R  V+  ++   V    L   + 
Sbjct: 494  LAKLHAARHGKDGHAPDPYATPFYQRVRRLVEWCVRRRKTVILLTIAAFVGSILLFRFVP 553

Query: 749  PQFFPKDRSYLSYVDLWLPEDATVEATARVAADAARIVTDRVAAFDAETGRAAKGLPPAL 808
             QFFP        VDL L E A++  TA           +RV   +A   +        +
Sbjct: 554  QQFFPASGRPELMVDLKLAEGASLANTA-----------ERVKQLEALLKQQ-----DGI 597

Query: 809  RSVTVFTGGGGPRFWFSVTPELRQPNYAQLLVEVSDNHLTKELIGPLQQALSERLPSARA 868
             +   + G G PRF+  +  +L   ++AQ +V        + L   L   + ++ P  RA
Sbjct: 598  DNYVAYVGTGSPRFYLPLDQQLPAASFAQFVVLAKSMEDRERLRSWLISTVDQQFPDLRA 657

Query: 869  DVMELENGPPIGVPVQLRLYGDDIPALRAESERLKAILRADPDATRVKDNWGADTFVARL 928
             V  LENGPP+G PVQ R+ G+ I   RA +  +   +R +P    V  +W   +    L
Sbjct: 658  RVTRLENGPPVGYPVQFRVTGEHIEKARALAREVADKVRENPHVVNVHLDWEEPSKAVFL 717

Query: 929  RVDPDKAALSGVTMLDVARATGNAATGTTVTALREGRLTVPVVSRLRPDERADATDVEGL 988
             +D D+A   GV+   +A    ++  GTTV+  RE    + ++ R    ER++  ++  L
Sbjct: 718  EIDQDRARALGVSTSHLASFLQSSLIGTTVSQYREDNELIEILLRGTLQERSELANLGSL 777

Query: 989  YVAGQGGTRVPLAQIAEPEYGMETARIFRRNQQRCVVISCFPREGVLPSEVVARAMPAIG 1048
             +    G  V L+Q+A  EYG E   I+ RN+   V +     +   P+ +V + +P + 
Sbjct: 778  ALPTDNGQSVALSQVATLEYGFEEGIIWHRNRLPTVTVRADIYDQEQPATLVKQILPTLQ 837

Query: 1049 RFRADLPPGFRLEFGGEHEEQVKGFKELAGVMGISIAMIYMALLFQFRNAVKPLIVFAAI 1108
              RA LP G+ LE GG  E+  +G K +   M + I ++   L+ Q R+  + ++VF   
Sbjct: 838  EIRAKLPDGYLLEVGGTVEDSERGQKSVNAGMPLFIVVVLSLLMIQLRSFSRTVMVFLTA 897

Query: 1109 PYGMTGAFAALRLMGQPFGFMAFLGIASLIGVIVSHIIVLFDFIEEKREEGEDLRTALLD 1168
            P G+ G    L +  QPFGF+A LG  +L G+I+ + ++L D IE+    G +   A+++
Sbjct: 898  PLGLIGVTLFLLVFRQPFGFVAMLGTIALAGMIMRNSVILVDQIEQDIAAGMERWQAIIE 957

Query: 1169 AGIVRLRPVMITVAATVIALFPLALHGGALWEPLCYAQAGGLTVATFVTLLMVPVLYA 1226
            A + R RP+++T  A V+A+ PL+      + P+  A  GGL VAT +TLL +P LYA
Sbjct: 958  ATVRRFRPIVLTALAAVLAMIPLS--RSVFYGPMAVAIMGGLIVATVLTLLFLPALYA 1013



 Score = 51.6 bits (122), Expect = 3e-10
 Identities = 29/102 (28%), Positives = 48/102 (47%)

Query: 16  NSARFFVEQRHIGWVLLVATLVWGVWAWHAMPQRKDPEIPVRAAAVLVAWPGAPAERVEE 75
           N + + +  R I   L++     G  ++  + Q +DP    +A  +   WPGA AE V  
Sbjct: 4   NLSAWALRNRQIVLFLMILLAAIGAMSYTKLGQSEDPPFTFKAMVIRTLWPGASAEEVAR 63

Query: 76  RITRRVEEAVGGNKWVEKIESVSRTGLSVVTLHLHERVAQTD 117
           ++T R+E+ +      E+I S SR G S VT    + +   D
Sbjct: 64  QVTERIEKKLMETGEYERIVSFSRPGESQVTFMARDSLHSKD 105