Pairwise Alignments

Query, 1236 a.a., AcrB/AcrD/AcrF family protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 1053 a.a., Probable transmembrane drug efflux protein from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  428 bits (1101), Expect = e-123
 Identities = 290/917 (31%), Positives = 449/917 (48%), Gaps = 48/917 (5%)

Query: 330  DARAALEAVAADRYSWRDLEAYTEKVRATLERLGSVGKVSRWGVRPETIFIDWSQERLAS 389
            D    + A+  + +S  D +   + VR  L R+  V KV  +GV+ E ++I+ SQ+RLA+
Sbjct: 156  DVYGVIYALQGEGFSPADKKQVADDVRQRLLRVKDVRKVELFGVQDEKLYIEISQKRLAT 215

Query: 390  LGLDPQQVAQTLAARNTSLPGGQLETRGRGVLLDSEGELRSATDLAEVMVATSASGAPLY 449
            LGL+ QQV   L  +N     G ++T    V +   G   S   L   M   +A+G  + 
Sbjct: 216  LGLNLQQVLDALGQQNAVESAGSVQTPQDVVQVRVAGAFNSVEQL-RAMPIRAANGTQIR 274

Query: 450  LRDVADVTRSYRAPVENLNHFVHRDADGTWRRGKAITLAVEMRSGEHIDAFSREVDAALG 509
            L D+A +   Y  P + L     +D+         I L + M  G  I A  + +   + 
Sbjct: 275  LGDIAKIGLGYVDPPQVLVRHEGKDS---------IALGISMAKGGDIIALGKALKTTVA 325

Query: 510  DLTQRLPEDLLVVRTSDQPRQVTEKVDLFTLSLEEAVVLVVAVAFIGFR----------- 558
             +   LP  + + +  DQP  VT  V+ F   L EAVV+V+AV+F+              
Sbjct: 326  GIEATLPAGMTLAQVQDQPSAVTNSVNEFVKVLIEAVVIVLAVSFLALGLHRRPGGRGLK 385

Query: 559  ----EWRSALLMALSIPLTLAMTFGMMHLLGIDLQQISIASLILALGLLVDDPVVAGDAI 614
                + R  L++ ++IPL LA+TF  MH  GI L +IS+ SLI+ALGLLVDD ++A + +
Sbjct: 386  RYVLDMRPGLVVFITIPLVLAITFLAMHYWGIGLHKISLGSLIIALGLLVDDAIIAVEMM 445

Query: 615  KREIAEGRPRRLAAWLGPTKLARAILYATITNIVAYLPFLLLTGDKGRFLYSMPIVVACS 674
             R++ EG     AA       A  +L  T+     +LP  L     G + +++  V   +
Sbjct: 446  VRKLEEGYDMMRAATFTWDATAMPMLTGTLITAAGFLPIGLANSTTGEYTFAIFAVTVLA 505

Query: 675  LVASRIVSMTFIPLLGSVLLDAG-RREGTVEERRARGLGRLYYAVGGWAIDHRWKVLAGS 733
            LV S +V++ F+P LG VLL      EG   E         + AV  W + HRW  +  +
Sbjct: 506  LVISWVVAVLFVPYLGVVLLKVKPHAEGEPHEVFDGPFYVRFRAVVDWCVQHRWLTIGAT 565

Query: 734  LLLVVAGFWLQGQLKPQFFPKDRSYLSYVDLWLPEDATVEATARVAADAARIVTDRVAAF 793
            +L  V G    G ++ QFFP        VD+WLPE +++ A   V     R V +R+A  
Sbjct: 566  ILTFVLGIAGMGSVQQQFFPDSSRPEILVDIWLPEGSSMPAMDEVT----RRVENRLAKE 621

Query: 794  DAETGRAAKGLPPALRSVTVFTGGGGPRFWFSVTPELRQPNYAQLLVEVSDNHLTKELIG 853
            +             +R VT + G G PRF+  +     Q N +Q++V   D    + L  
Sbjct: 622  EG------------VRGVTTWVGSGVPRFYLPLDQIFPQTNVSQMIVLPQDLKTREHLRK 669

Query: 854  PLQQALSERLPSARADVMELENGPPIGVPVQLRLYGDDIPALRAESERLKAILRADPDAT 913
             L   L+   P  R  V  L NGPP+  PVQ R+ G D   LR  ++ +K  +R +P+  
Sbjct: 670  ALPGLLATEFPEVRGRVKLLPNGPPVPYPVQFRVVGSDPQVLRGLADEVKLAMRENPNMR 729

Query: 914  RVKDNWGADTFVARLRVDPDKAALSGVTMLDVARATGNAATGTTVTALREGRLTVPVVSR 973
             V DNW       RL VD  KA   GV+   +A+A+    +GTTV   REG   + +V R
Sbjct: 730  GVNDNWNESVKRLRLEVDQAKARALGVSSQSIAQASRTLLSGTTVGQYREGDKLIDIVLR 789

Query: 974  LRPDERADATDVEGLYVAGQGGTRVPLAQIAEPEYGMETARIFRRNQQRCVVISCFPREG 1033
               +ER   T +   Y+    G  +PL QIA P +  E   ++R N+   + +     EG
Sbjct: 790  QPLEERDAITSLANAYLPTASGQAIPLLQIARPVFDWEPGVLWRENRDYAITVQGDVVEG 849

Query: 1034 VLPSEVVARAMP---AIGRFRADLPPG-FRLEFGGEHEEQVKGFKELAGVMGISIAMIYM 1089
            +  + V A+  P   AI    A    G + +E  G  EE  KG   +   + + + +++ 
Sbjct: 850  LQGATVTAQLQPKLKAISDGWASKGLGAYHIEVAGAVEESSKGSASIVVGVPLMLFIVFT 909

Query: 1090 ALLFQFRNAVKPLIVFAAIPYGMTGAFAALRLMGQPFGFMAFLGIASLIGVIVSHIIVLF 1149
             L+ Q ++  + ++VF   P GM G   AL L+ +PFGF+A LG+ +L+G+I  + ++L 
Sbjct: 910  LLMLQLQSFSRSMLVFLTGPLGMAGVAGALLLLNRPFGFVALLGVIALMGMIQRNSVILI 969

Query: 1150 DFIEEKREEGEDLRTALLDAGIVRLRPVMITVAATVIALFPLALHGGALWEPLCYAQAGG 1209
            D IE+ R  G     A+++A + R+RP+++T AA V+A+ PL+      W P+  A  GG
Sbjct: 970  DQIEQDRARGVPAWDAIVEAAVRRMRPIVLTAAAAVLAMIPLS--RSVFWGPMAVAIMGG 1027

Query: 1210 LTVATFVTLLMVPVLYA 1226
            L VAT +TLL +P +YA
Sbjct: 1028 LIVATVLTLLALPAMYA 1044



 Score = 57.8 bits (138), Expect = 5e-12
 Identities = 36/143 (25%), Positives = 69/143 (48%), Gaps = 7/143 (4%)

Query: 11  WLHTRNSARFFVEQRHIGWVLLVATLVWGVWAWHAMPQRKDPEIPVRAAAVLVAWPGAPA 70
           W+   N +++ ++ +     L++  +V GV  +  + Q +DP    RA  V   WPGA A
Sbjct: 16  WVSRFNLSQWALDHQAFTRYLMIVLMVLGVVGYFQLGQDEDPPFTFRAMVVRAYWPGATA 75

Query: 71  ERVEERITRRVEEAVGGNKWVEKIESVSRTGLSVVTLHLHERVAQTDTVLDDIGFRLQEV 130
           E+V E++  R+E+ +    + +KI S S+ G +++   L +  +     +  I +  ++ 
Sbjct: 76  EQVAEQVADRIEKTLQEVPYADKIRSYSKPGETLIIFQLKD--SSPPQEVQQIWYTARKK 133

Query: 131 -----GQLPDGAGPLTYIKDFGD 148
                G LP G     +  +FGD
Sbjct: 134 VGDMRGTLPQGVVGPFFNDEFGD 156