Pairwise Alignments

Query, 1236 a.a., AcrB/AcrD/AcrF family protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 1029 a.a., efflux RND transporter permease subunit from Pectobacterium carotovorum WPP14

 Score =  377 bits (968), Expect = e-108
 Identities = 276/958 (28%), Positives = 453/958 (47%), Gaps = 43/958 (4%)

Query: 279  HTEPGLVVLDVSTRHDAAALSARLAVFRA-ERVGANA--LHPDLWEPAVFASGDDARAAL 335
            +T PGL    +S          +   ++A +++G  A  L   +  P V     D   AL
Sbjct: 88   YTRPGLSFTMLSLLDSTPPSQVQAEFYQARKKLGDEAKNLPAGVIGPMVNDEFSDVTFAL 147

Query: 336  EAVAADRYSWRDLEAYTEKVRATLERLGSVGKVSRWGVRPETIFIDWSQERLASLGLDPQ 395
             A+ A     R L    E +R  L  +  V KV+  G + E IF+ +S +RLA+LG+ PQ
Sbjct: 148  FALKAKGEPQRVLVRDAESLRQRLLHVPGVKKVNIIGEQTERIFVSFSHDRLATLGISPQ 207

Query: 396  QVAQTLAARNTSLPGGQLETRGRGVLLDSEGELRSATDLAEVMVATSASGAPLYLRDVAD 455
             +   L  +N   P G +ET G  V L  +G   +   +    +   A G  L L DVA 
Sbjct: 208  DIFSALNNQNVLTPAGSIETDGPQVFLRLDGAFDTLEKIRNTPIV--AQGRTLKLSDVAT 265

Query: 456  VTRSYRAPVENLNHFVHRDADGTWRRGKAITLAVEMRSGEHIDAFSREVDAALGDLTQRL 515
            V+R Y  P   L   V    +       A+ L V MR G +     + +DA    + + +
Sbjct: 266  VSRGYEDPATFL---VRNQGE------PALLLGVVMREGWNGLTLGKALDAETARINEGM 316

Query: 516  PEDLLVVRTSDQPRQVTEKVDLFTLSLEEAVVLVVAVAFIGFREWRSALLMALSIPLTLA 575
               + + + +DQ   ++  VD F +    A+++V+AV F+    WR  +++A ++PLTLA
Sbjct: 317  LLGMTLSKVTDQSVNISSSVDEFMIKFFVALLVVMAVCFVSMG-WRVGVVVAAAVPLTLA 375

Query: 576  MTFGMMHLLGIDLQQISIASLILALGLLVDDPVVAGDAIKREIAEGRPRRLAAWLGPTKL 635
            + F +M   G +  +I++ SLILALGLLVDD ++A + +  ++ EG  R  A+    +  
Sbjct: 376  IVFVVMEASGKNFDRITLGSLILALGLLVDDAIIAIEMMVVKMEEGYGRIKASAYAWSHT 435

Query: 636  ARAILYATITNIVAYLPFLLLTGDKGRFLYSMPIVVACSLVASRIVSMTFIPLLGSVLLD 695
            A  +L  T+   V ++P        G +  +M  +V  +L+AS +V++ F P LG  +L 
Sbjct: 436  AAPMLAGTLVTAVGFMPNGFAQSTAGEYTSNMFWIVGIALIASWVVAVVFTPYLGVKMLP 495

Query: 696  A-----GRREGTVEERRARGLGRLYYAVGGWAIDHRWKVLAGSLLLVVAGFWLQGQLKPQ 750
                  G        R      RL   V    I  +W V +  ++L V      G +K Q
Sbjct: 496  EIKTVEGGHAAIYNTRHYNQFRRLLTRV----IAQKWMVASTVIVLFVVAILGMGMVKKQ 551

Query: 751  FFPKDRSYLSYVDLWLPEDATVEATARVAADAARIVTDRVAAFDAETGRAAKGLPPALRS 810
            FFP        V++ +P   ++E T+        + T ++  +  +   A        + 
Sbjct: 552  FFPTSDRPEVLVEVQMPYGTSIEQTS--------VTTAKIEDWLKQQDEA--------KI 595

Query: 811  VTVFTGGGGPRFWFSVTPELRQPNYAQLLVEVSDNHLTKELIGPLQQALSERL-PSARAD 869
            VT + G G PRF+ ++ PEL  P++A+++V        + L   L++  +  L P AR  
Sbjct: 596  VTSYIGQGSPRFYLAMAPELPDPSFAKIVVLTDSQEAREALKFRLREVAAGGLAPEARIR 655

Query: 870  VMELENGPPIGVPVQLRLYGDDIPALRAESERLKAILRADPDATRVKDNWGADTFVARLR 929
            V +L  GP    PV  R+ G D   LR  ++++KA+++A P    V  +WG         
Sbjct: 656  VTQLVFGPYSPFPVAYRVMGPDPATLREIADKVKAVMQASPMMRTVNTDWGPRVPTLHFT 715

Query: 930  VDPDKAALSGVTMLDVARATGNAATGTTVTALREGRLTVPVVSRLRPDERADATDVEGLY 989
            +D D+    G+T   VA+      +G  +T++RE   +V VV R   + R D   +EG  
Sbjct: 716  LDQDRLQSVGLTSSSVAQQLQFLLSGVPITSVREDIRSVQVVGRAAGEIRRDPAKIEGFT 775

Query: 990  VAGQGGTRVPLAQIAEPEYGMETARIFRRNQQRCVVISCFPREGVLPSEVVARAMPAIGR 1049
            + G  G R+PL+QI E E  ME   + RR++   + +     E + P +V A  + ++  
Sbjct: 776  LVGAAGQRIPLSQIGEVEVRMEDPVLRRRDRTPTITVRGDIAETLQPPDVSATIVKSLQP 835

Query: 1050 FRADLPPGFRLEFGGEHEEQVKGFKELAGVMGISIAMIYMALLFQFRNAVKPLIVFAAIP 1109
                LP G+R+E  G  EE  K  K +A +  I IA+  + ++ Q R+    ++VF   P
Sbjct: 836  IIDTLPAGYRIEQAGSIEESAKATKAMAPLFPIMIAITLLIIILQVRSMSAMVMVFLTAP 895

Query: 1110 YGMTGAFAALRLMGQPFGFMAFLGIASLIGVIVSHIIVLFDFIEEKREEGEDLRTALLDA 1169
             G+ G    L L  QPFG  A +G+ +L G+++ + ++L   I    +EG D   A+++A
Sbjct: 896  LGLIGVVPTLLLFNQPFGINALVGLIALSGILMRNTLILIGQIHHNEKEGLDPFHAVVEA 955

Query: 1170 GIVRLRPVMITVAATVIALFPLALHGGALWEPLCYAQAGGLTVATFVTLLMVPVLYAI 1227
             + R RPV++T  A ++A  PL       W  L Y   GG    T +TL+ +P +YAI
Sbjct: 956  TVQRARPVLLTAMAAILAFIPLT--HSVFWGTLAYTLIGGTLGGTIMTLVFLPAMYAI 1011



 Score = 54.3 bits (129), Expect = 5e-11
 Identities = 25/94 (26%), Positives = 51/94 (54%)

Query: 16  NSARFFVEQRHIGWVLLVATLVWGVWAWHAMPQRKDPEIPVRAAAVLVAWPGAPAERVEE 75
           N +   V +R I   L++     G+ ++  + + +DP   V+   ++ AWPGA A+ +++
Sbjct: 7   NLSALAVRERAITLFLIILITAAGILSFFELGRAEDPPFTVKQMTIISAWPGATAQEMQD 66

Query: 76  RITRRVEEAVGGNKWVEKIESVSRTGLSVVTLHL 109
           ++   +E+ +   KW ++ E+ +R GLS   L L
Sbjct: 67  QVAEPLEKRMQELKWYDRSETYTRPGLSFTMLSL 100