Pairwise Alignments

Query, 1236 a.a., AcrB/AcrD/AcrF family protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 1025 a.a., efflux RND transporter permease subunit from Pectobacterium carotovorum WPP14

 Score =  382 bits (980), Expect = e-109
 Identities = 272/918 (29%), Positives = 440/918 (47%), Gaps = 37/918 (4%)

Query: 312  ANALHPDLWEPAVFASGDDARAALEAVAADRYSWRDLEAYTEKVRATLERLGSVGKVSRW 371
            A++L   +  PAV    DD    +    AD +S R+L    + +R+ L  +  VGKV   
Sbjct: 129  ASSLPDGVSPPAVNDEFDDTFGTIYGFTADGFSPRELRDKVDDIRSALLSVPDVGKVDML 188

Query: 372  GVRPETIFIDWSQERLASLGLDPQQVAQTLAARNTSLPGGQLETRGRGVLLDSEGELRSA 431
            GV  E I + +S  RLA LGLDPQQV  +L A+N   P G + T    V +   G   S 
Sbjct: 189  GVEEEQIVVTFSPRRLAGLGLDPQQVIDSLKAQNAVTPAGIIRTEDEKVAVRVSGAFTSE 248

Query: 432  TDLAEVMVATSASGAPLYLRDVADVTRSYRAPVENLNHFVHRDADGTWRRG--KAITLAV 489
              L ++ +       PL   D+A ++R    P              T+R    KA+ LA+
Sbjct: 249  QSLRQITLRIGGKFVPL--TDIATISRETAEP-----------PSPTFRVNGEKAVGLAI 295

Query: 490  EMRSGEHIDAFSREVDAALGDLTQRLPEDLLVVRTSDQPRQVTEKVDLFTLSLEEAVVLV 549
             M    ++  F + +   +  +  +L   + + R +DQ   V   V  F   L EAV +V
Sbjct: 296  SMAPTGNMLNFGQAIRDKMNVIATQLSHGIEMTRVADQSEVVKGAVGGFIKVLLEAVAIV 355

Query: 550  VAVAFIGFREWRSALLMALSIPLTLAMTFGMMHLLGIDLQQISIASLILALGLLVDDPVV 609
            +AV+F+     R+ L++A SIP+ LAMTF  M + GI LQ+IS+ +LI++LGLLVDD ++
Sbjct: 356  LAVSFVSLGS-RAGLVVAASIPIVLAMTFIGMEITGIGLQRISLGALIISLGLLVDDAMI 414

Query: 610  AGDAIKREIAEGRPRRLAAWLGPTKLARAILYATITNIVAYLPFLLLTGDKGRFLYSMPI 669
              +A+   + EG  R+ AA       A  +L  T+  I  ++P    +   G + +S+ +
Sbjct: 415  TVEAMVSRLEEGWDRKRAAAWAYESTAFPMLTGTLVMIAGFIPVGFASSSAGEYCFSLFV 474

Query: 670  VVACSLVASRIVSMTFIPLLGSVLLDAGRREGTVEERRARGLGRLYYAVGGWAIDHRWKV 729
            VV  +L++S IV++ F PL G  LL    R    E  R   +GR Y      A+  R   
Sbjct: 475  VVLIALLSSWIVAILFSPLFGVWLLPKMFRHQHNEPGR---VGRFYRQWLQRALAKRGMT 531

Query: 730  LAGSLLLVVAGFWLQGQLKPQFFPKDRSYLSYVDLWLPEDATVEATARVAADAARIVTDR 789
            L  ++LL+V   +   +L+ +FFP        V L LP +A+  AT   A     I+ D 
Sbjct: 532  LLIAVLLLVVALFGATRLEGEFFPASDRPELLVSLTLPANASQTATEAQAKRLEAILKD- 590

Query: 790  VAAFDAETGRAAKGLPPALRSVTVFTGGGGPRFWFSVTPELRQPNYAQLLVEVSDNHLTK 849
                            P +   + + G G  RF+  +   L   N AQL+V   +     
Sbjct: 591  ---------------DPDVDHFSTYVGSGAVRFYLPMDVLLSHENIAQLVVVAKNLEARD 635

Query: 850  ELIGPLQQALSERLPSARADVMELENGPPIGVPVQLRLYGDDIPALRAESERLKAILRAD 909
             L   L Q L     +  A V  LE GPP+G P++ R+ G DI  +R  ++ L +++   
Sbjct: 636  ALAAKLNQVLERDFSNIVARVSALELGPPVGWPLKYRVAGPDIHRVRDIAQGLASLVGNQ 695

Query: 910  PDATRVKDNWGADTFVARLRVDPDKAALSGVTMLDVARATGNAATGTTVTALREGRLTVP 969
             D   V    G       + ++  +A   G++  DVA       +G+T+T++R+    V 
Sbjct: 696  ADVREVNLTAGEPERSVNVVLNQTEARAVGISSQDVASMLAAIFSGSTLTSVRDDNRLVD 755

Query: 970  VVSRLRPDERADATDVEGLYVAGQGGTRVPLAQIAEPEYGMETARIFRRNQQRCVVISCF 1029
            VV R  P ER D   +  L +    G  VPL QIA   YG++   I+RR ++  + +   
Sbjct: 756  VVVRGTPQERRDVATIANLQIPIADGRSVPLGQIATVAYGVDDPIIWRRQREPFITVQMD 815

Query: 1030 PREGVLPSEVVARAMPAIGRFRADLPPGFRLEFGGEHEEQVKGFKELAGVMGISIAMIYM 1089
               G+    +  +  P I R+RA LP G+ +  GG   E  KG   +  V+ +++ ++ +
Sbjct: 816  VAPGMRAPALSEKLAPEIERYRAALPAGYHITEGGVAAESDKGNGSVYAVLPVTLLVMLV 875

Query: 1090 ALLFQFRNAVKPLIVFAAIPYGMTGAFAALRLMGQPFGFMAFLGIASLIGVIVSHIIVLF 1149
             L+ Q +   + ++ F   P+G+ G  AA+   G P GF+A LG  +L G+I+ + ++L 
Sbjct: 876  LLMIQLQRISRMVLAFLTAPFGLIGIVAAMLPTGTPMGFVALLGAIALAGMIIRNAVILI 935

Query: 1150 DFIEEKREEGEDLRTALLDAGIVRLRPVMITVAATVIALFPLALHGGALWEPLCYAQAGG 1209
              ++   + G+    A+++A   R RP+++T  A ++ + P+A      W P+ YA  GG
Sbjct: 936  GEVDLNVKNGQPATEAIVNAAHHRSRPIVLTALAAILGMIPIAHQ--VFWGPMAYAIIGG 993

Query: 1210 LTVATFVTLLMVPVLYAI 1227
            L VAT +TLL +P   ++
Sbjct: 994  LMVATLLTLLALPAALSL 1011



 Score = 60.5 bits (145), Expect = 7e-13
 Identities = 36/138 (26%), Positives = 71/138 (51%), Gaps = 8/138 (5%)

Query: 17  SARFFVEQRHIGWVLLVATLVWGVWAWHAMPQRKDPEIPVRAAAVLVAWPGAPAERVEER 76
           SA     Q+ + +++LV  +  GV ++  +P+ +DP   +++A V  AWPGA        
Sbjct: 14  SAWALAHQQFVAFMMLVI-MAAGVMSYQRLPRNEDPAFTIKSAVVSAAWPGATVSDTVNF 72

Query: 77  ITRRVEEAVGGNKWVEKIESVSRTGLSVVTLHLHERVAQTDTVLDDIGFRLQE-----VG 131
           +T ++E+ +    +++ +ES +R G SVV ++L +      + + +I + +++       
Sbjct: 73  VTDKLEKKLQETPYLDYVESYTRAGESVVFVNLRDDT--PPSAVPNIWYTVRKKMTDIAS 130

Query: 132 QLPDGAGPLTYIKDFGDT 149
            LPDG  P     +F DT
Sbjct: 131 SLPDGVSPPAVNDEFDDT 148