Pairwise Alignments

Query, 1236 a.a., AcrB/AcrD/AcrF family protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 1021 a.a., efflux RND transporter permease subunit from Dickeya dianthicola ME23

 Score =  387 bits (995), Expect = e-111
 Identities = 285/958 (29%), Positives = 450/958 (46%), Gaps = 44/958 (4%)

Query: 279  HTEPGLVVLDVSTRHDAAALSARLAVFRAERVGANALHPDL----WEPAVFASGDDARAA 334
            ++ PG  V+ V+ R D+   S    ++ A R     + P L     EPAV    DD    
Sbjct: 91   YSRPGEAVIFVNLR-DSTPPSEVQGIWYAIRKKMKDIAPSLPDGVGEPAVNDEFDDTFGT 149

Query: 335  LEAVAADRYSWRDLEAYTEKVRATLERLGSVGKVSRWGVRPETIFIDWSQERLASLGLDP 394
            +    AD YS R+L    + +R  L     VGK+   GV+ E I   +S  +LA +GLD 
Sbjct: 150  IYGFTADGYSPRELRDRVDDIRTELLATPDVGKIDVLGVQDEQIVAAFSPRQLAGMGLDL 209

Query: 395  QQVAQTLAARNTSLPGGQLETRGRGVLLDSEGELRSATDLAEVMVATSASGAPLYLRDVA 454
            QQV   L A+N   P G + T    V L   G   S   L +V +       PL   D+A
Sbjct: 210  QQVTAALQAQNAVSPTGAIRTDNDKVALRVSGAFVSEESLRQVTLHIGGRFIPL--TDIA 267

Query: 455  DVTRSYRAPVENLNHFVHRDADGTWRRGK-AITLAVEMRSGEHIDAFSREVDAALGDLTQ 513
             V R    P           A      G+ AI LAV M    ++  F + + + +  +  
Sbjct: 268  TVYRQAAEP----------PAPAFRVNGQPAIGLAVSMAPTGNMLDFGQALRSKMATIGA 317

Query: 514  RLPEDLLVVRTSDQPRQVTEKVDLFTLSLEEAVVLVVAVAFIGFREWRSALLMALSIPLT 573
             LP  + V+  +DQ   V   V+ F   L EAVV+V+AV+F+     R+ L++A SIP+ 
Sbjct: 318  SLPHGIEVINVADQSSVVKSSVNGFVKVLLEAVVIVLAVSFVSLGS-RAGLVVAASIPMV 376

Query: 574  LAMTFGMMHLLGIDLQQISIASLILALGLLVDDPVVAGDAIKREIAEGRPRRLAAWLGPT 633
            L MTF  M + GI LQ+IS+ +LI+ALGLLVDD ++  +A+   + +G  R  AA     
Sbjct: 377  LTMTFTGMEIAGIGLQRISLGALIIALGLLVDDAMITVEAMVSSLEKGEAREQAATRAYD 436

Query: 634  KLARAILYATITNIVAYLPFLLLTGDKGRFLYSMPIVVACSLVASRIVSMTFIPLLGSVL 693
              A  +L  T+  +  ++P        G + YS+ IVV  SL++S  V++ F PL+G  L
Sbjct: 437  TTAFPMLTGTLVMVAGFIPVGFAASSAGEYCYSLFIVVLISLLSSWAVAVLFSPLIGVWL 496

Query: 694  LDAGRREGTVEERRARGLGRLYYAVGGWAIDHRWKVLAGSLLLVVAGFWLQGQLKPQFFP 753
            L          +  A  L R Y  +   A+ +R + L  S+ L+       G+L+ +FFP
Sbjct: 497  LPKAMN---AHDHHAGRLSRAYDRLLSTALRYRGRTLLLSVALLALAVVAAGRLEGEFFP 553

Query: 754  KDRSYLSYVDLWLPEDATVEATARVAADAARIVTDRVAAFDAETGRAAKGLP--PALRSV 811
                    V L LP +A+ +AT R                  E  R  + L   P L   
Sbjct: 554  ASDRPELLVSLTLPRNASQQATER------------------EVVRLEQSLKNDPDLDHF 595

Query: 812  TVFTGGGGPRFWFSVTPELRQPNYAQLLVEVSDNHLTKELIGPLQQALSERLPSARADVM 871
            + + G G  RF+  +   L+  N AQL+V          L   L++ L +        V 
Sbjct: 596  STYVGSGAVRFYLPMDVLLQNENIAQLVVVAKGLKERDALRARLEKRLQQDFSHLVTRVS 655

Query: 872  ELENGPPIGVPVQLRLYGDDIPALRAESERLKAILRADPDATRVKDNWGADTFVARLRVD 931
             LE GPP+G P++ R+ G DI  +R  +  L  ++  +PDA  V    G      R+ ++
Sbjct: 656  PLELGPPVGWPLKYRVTGPDIDKVREYAAGLATLIGGNPDAREVNLTAGEPERAIRIDLN 715

Query: 932  PDKAALSGVTMLDVARATGNAATGTTVTALREGRLTVPVVSRLRPDERADATDVEGLYVA 991
              +A   G++  DVA A     +G+ VT++R+    V VV R R +ER +   V  L + 
Sbjct: 716  QTEARAVGISSQDVASALATIFSGSVVTSVRDRNRMVGVVVRARDEERQNLDTVASLQLR 775

Query: 992  GQGGTRVPLAQIAEPEYGMETARIFRRNQQRCVVISCFPREGVLPSEVVARAMPAIGRFR 1051
               G RVPL QIA   YG++   I+RR +   + +      GV    +     P +  ++
Sbjct: 776  AANGQRVPLGQIASVGYGVDEPIIWRRQRLPFITVQTDLAPGVRAQTLSTTLAPQVAAYQ 835

Query: 1052 ADLPPGFRLEFGGEHEEQVKGFKELAGVMGISIAMIYMALLFQFRNAVKPLIVFAAIPYG 1111
            A LP G+ +E GG   E  KG   +  V+ +++ ++ + L+ Q +   + ++     P+G
Sbjct: 836  AALPAGYHIEEGGSAAESNKGNNSVYQVLPVTLLVMLILLMVQLQRFSRMMLALLMAPFG 895

Query: 1112 MTGAFAALRLMGQPFGFMAFLGIASLIGVIVSHIIVLFDFIEEKREEGEDLRTALLDAGI 1171
            + G  AA+   G P GF+A LG+ +L G+I+ + ++L   ++     G     A++ A  
Sbjct: 896  LIGVVAAMLPTGTPMGFVALLGVIALAGMIIRNAVILISEVDTNTAAGMTTNEAIIHAAR 955

Query: 1172 VRLRPVMITVAATVIALFPLALHGGALWEPLCYAQAGGLTVATFVTLLMVPVLYAIAV 1229
             R RP+++T  A ++ + P+A      W P+ YA  GGL VAT +TL ++P   ++ +
Sbjct: 956  HRSRPILLTALAAILGMIPIATQ--VFWGPMAYAIIGGLIVATLLTLTVLPAAVSLVM 1011



 Score = 56.2 bits (134), Expect = 1e-11
 Identities = 35/136 (25%), Positives = 69/136 (50%), Gaps = 4/136 (2%)

Query: 17  SARFFVEQRHIGWVLLVATLVWGVWAWHAMPQRKDPEIPVRAAAVLVAWPGAPAERVEER 76
           SA     Q+ + + +LV     GV ++  +P+ +DP   ++ A V  +WPGA  +     
Sbjct: 12  SAWALAHQQLVAFFMLVIVAA-GVMSYERLPRNEDPAFTIKTAVVSASWPGATVQDTVSF 70

Query: 77  ITRRVEEAVGGNKWVEKIESVSRTGLSVVTLHLHERV--AQTDTVLDDIGFRLQEVG-QL 133
           +T  +E+ +    +++ IES SR G +V+ ++L +    ++   +   I  +++++   L
Sbjct: 71  VTDVLEKKLQETPYLDFIESYSRPGEAVIFVNLRDSTPPSEVQGIWYAIRKKMKDIAPSL 130

Query: 134 PDGAGPLTYIKDFGDT 149
           PDG G      +F DT
Sbjct: 131 PDGVGEPAVNDEFDDT 146