Pairwise Alignments

Query, 1236 a.a., AcrB/AcrD/AcrF family protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 1021 a.a., efflux RND transporter permease subunit from Dickeya dadantii 3937

 Score =  399 bits (1026), Expect = e-115
 Identities = 289/958 (30%), Positives = 453/958 (47%), Gaps = 44/958 (4%)

Query: 279  HTEPGLVVLDVSTRHDAAALSARLAVFRAERVGANALHPDL----WEPAVFASGDDARAA 334
            ++ PG  V+ V+ R D+   S    ++   R     + P L     EPAV    DD    
Sbjct: 91   YSRPGEAVIFVNLR-DSTPPSEVPGIWYTVRKKMKDITPSLPDGVSEPAVNDEFDDTFGT 149

Query: 335  LEAVAADRYSWRDLEAYTEKVRATLERLGSVGKVSRWGVRPETIFIDWSQERLASLGLDP 394
            +    AD YS R+L    + +R  L     VGK+   GV+ E I + +S  +LA +GLD 
Sbjct: 150  IYGFTADGYSPRELRDKVDDIRTELLATPDVGKIDVLGVQEEQIVVAFSPRQLAGMGLDL 209

Query: 395  QQVAQTLAARNTSLPGGQLETRGRGVLLDSEGELRSATDLAEVMVATSASGAPLYLRDVA 454
            QQV   L A+N   P G + T    V L   G   S   L +V +       PL   D+A
Sbjct: 210  QQVTAALQAQNAVSPTGTIRTANDKVELRVSGAFVSEESLRQVTLRIGGRFIPL--TDIA 267

Query: 455  DVTRSYRAPVENLNHFVHRDADGTWRRGK-AITLAVEMRSGEHIDAFSREVDAALGDLTQ 513
             V R    P           A      G+ AI LA+ M    ++  F + +   +  ++ 
Sbjct: 268  TVHRQAAEP----------PAPAFRVNGQPAIGLAISMAPTGNMLDFGQALRGKMATISA 317

Query: 514  RLPEDLLVVRTSDQPRQVTEKVDLFTLSLEEAVVLVVAVAFIGFREWRSALLMALSIPLT 573
             LP  + V   +DQ   V   V  F   L EAVV+V+AV+F+     R+ L++A SIP+ 
Sbjct: 318  SLPHGIEVTNVADQSSVVKSSVSGFVKVLLEAVVIVLAVSFVSLGS-RAGLVVAASIPIV 376

Query: 574  LAMTFGMMHLLGIDLQQISIASLILALGLLVDDPVVAGDAIKREIAEGRPRRLAAWLGPT 633
            LAMTF  M + GI LQ+IS+ +LI+ALGLLVDD ++  +A+   + +G  R  AA     
Sbjct: 377  LAMTFTGMEIAGIGLQRISLGALIIALGLLVDDAMITVEAMVSSLEKGEAREQAATRAYE 436

Query: 634  KLARAILYATITNIVAYLPFLLLTGDKGRFLYSMPIVVACSLVASRIVSMTFIPLLGSVL 693
              A  +L  T+  I  ++P        G + YS+ IVV  SL++S +V++ F PL+G  L
Sbjct: 437  TTAFPMLTGTLVMIAGFIPVGFAASSAGEYCYSLFIVVLISLLSSWVVAVLFSPLIGVWL 496

Query: 694  LDAGRREGTVEERRARGLGRLYYAVGGWAIDHRWKVLAGSLLLVVAGFWLQGQLKPQFFP 753
            L    +     +  A  L R Y  +   A+ +R + L  S+ L+    W  G+L+ +FFP
Sbjct: 497  LPKTMK---AHDHNAGRLSRAYDRLLSTALRYRGRTLLLSVALLALAVWAAGRLEGEFFP 553

Query: 754  KDRSYLSYVDLWLPEDATVEATARVAADAARIVTDRVAAFDAETGRAAKGLP--PALRSV 811
                    V L LP +AT EAT R                  E  R  + L   P L   
Sbjct: 554  ASDRPELLVSLTLPRNATQEATER------------------EVVRLEQSLKNDPDLDHF 595

Query: 812  TVFTGGGGPRFWFSVTPELRQPNYAQLLVEVSDNHLTKELIGPLQQALSERLPSARADVM 871
            + + G G  RF+  +   L+  N AQL+V          L   L++ L +        V 
Sbjct: 596  STYVGSGAVRFYLPMDVLLQNENIAQLVVVAKGLKERDALRARLEKRLQQDFSHLVTRVS 655

Query: 872  ELENGPPIGVPVQLRLYGDDIPALRAESERLKAILRADPDATRVKDNWGADTFVARLRVD 931
             LE GPP+G P++ R+ G DI  +R  +  L  ++  +PDA  V    G      R+ V+
Sbjct: 656  PLELGPPVGWPLKYRVTGPDIDKVREYATGLATLIGNNPDAREVNLTAGEPERAIRVGVN 715

Query: 932  PDKAALSGVTMLDVARATGNAATGTTVTALREGRLTVPVVSRLRPDERADATDVEGLYVA 991
              +A   G++  DVA A     +G+ VT++R+    V VV R R +ER +   V  L + 
Sbjct: 716  QTEARAVGISSQDVASALATIFSGSAVTSVRDRNRMVAVVVRARDEERQNLDTVASLQLR 775

Query: 992  GQGGTRVPLAQIAEPEYGMETARIFRRNQQRCVVISCFPREGVLPSEVVARAMPAIGRFR 1051
               G RVPL QIA   YG++   I+RR +   + +      GV    +     P +  ++
Sbjct: 776  AANGQRVPLGQIASVGYGVDEPIIWRRQRLPFITVQTDLAPGVRAQTLSTTLAPQVAAYQ 835

Query: 1052 ADLPPGFRLEFGGEHEEQVKGFKELAGVMGISIAMIYMALLFQFRNAVKPLIVFAAIPYG 1111
            A LP G+ +E GG   E  KG   +  V+ +++ ++ + L+ Q +   + ++     P+G
Sbjct: 836  ASLPAGYHIEEGGSVAESNKGNNSVYQVLPVTLLVMLILLMVQLQRFSRMMLALLMAPFG 895

Query: 1112 MTGAFAALRLMGQPFGFMAFLGIASLIGVIVSHIIVLFDFIEEKREEGEDLRTALLDAGI 1171
            + G  AA+   G P GF+A LG+ +L G+I+ + ++L   ++     G  +  A++ A  
Sbjct: 896  LIGVVAAMLPTGTPMGFVALLGVIALAGMIIRNAVILISEVDTNTAAGMPINEAIIHAAR 955

Query: 1172 VRLRPVMITVAATVIALFPLALHGGALWEPLCYAQAGGLTVATFVTLLMVPVLYAIAV 1229
             R RP+++T  A ++ + P+A      W P+ YA  GGL VAT +TL ++P   ++ +
Sbjct: 956  HRSRPILLTALAAILGMIPIATQ--VFWGPMAYAIIGGLIVATLLTLTVLPAAISLVM 1011



 Score = 53.1 bits (126), Expect = 1e-10
 Identities = 33/136 (24%), Positives = 68/136 (50%), Gaps = 4/136 (2%)

Query: 17  SARFFVEQRHIGWVLLVATLVWGVWAWHAMPQRKDPEIPVRAAAVLVAWPGAPAERVEER 76
           SA     Q+ + + +LV     GV ++  +P+ +DP   ++ A V  +WPGA  +     
Sbjct: 12  SAWALAHQQLVAFFMLVIVAA-GVMSYERLPRNEDPAFTIKTAVVSASWPGATVQDTVSF 70

Query: 77  ITRRVEEAVGGNKWVEKIESVSRTGLSVVTLHLHERVAQTDT--VLDDIGFRLQEV-GQL 133
           +T  +E+ +    +++ IES SR G +V+ ++L +    ++   +   +  +++++   L
Sbjct: 71  VTDVLEKKLQETPYLDFIESYSRPGEAVIFVNLRDSTPPSEVPGIWYTVRKKMKDITPSL 130

Query: 134 PDGAGPLTYIKDFGDT 149
           PDG        +F DT
Sbjct: 131 PDGVSEPAVNDEFDDT 146