Pairwise Alignments

Query, 235 a.a., flagellar biosynthetic protein fliP (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 217 a.a., type III secretion system protein SsaR from Pseudomonas simiae WCS417

 Score =  149 bits (376), Expect = 4e-41
 Identities = 83/211 (39%), Positives = 128/211 (60%), Gaps = 10/211 (4%)

Query: 32  LEILFMLTVLSLAPAIMLTVTSFTRIIIVFHFVRQALGVQALPPSQVLASLAIFMTVVIM 91
           L +   +  L+L P +++  TSF +I+IV    R A+GVQ +PPS  +  +A+  T+ IM
Sbjct: 9   LILALFVGALALMPMLLIICTSFLKIVIVLMITRNAIGVQQVPPSMAVNGIALAATLFIM 68

Query: 92  TPVGKEINDN--ALQPYLREEIGFNEALKKAEAPMRTFMFKHTREKDLSVFYAVT----- 144
            PVG EI +   A        I F +  ++A  P+R FM ++     L+     T     
Sbjct: 69  APVGYEIAEGIKASPVDTSSVINFLQTGREAIQPLRAFMLRNVDPDVLTHLLENTARLWP 128

Query: 145 -KMEQPRSKDDVPTIMLAAGYVISELKTGFTIGFLIYIPFLILDMVISSILLAMGMMMLP 203
            KM Q   ++D+  I+L   +V+S+L+ GF IGFLIYIPF+++D+++S++LLA+GM M+ 
Sbjct: 129 AKMAQEVQREDL--ILLVPAFVLSQLQAGFEIGFLIYIPFIVIDLIVSNLLLALGMQMVS 186

Query: 204 PMMVSMPFKLLLFVMVDGWGLLVGSLVNSFM 234
           PM +S+P KLLLFVMV GW  L+ SL  S++
Sbjct: 187 PMTISLPLKLLLFVMVSGWSRLLDSLFLSYL 217