Pairwise Alignments

Query, 249 a.a., RNA methyltransferase, TrmH family, group 3 (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 247 a.a., 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB (EC 2.1.1.-) from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  110 bits (274), Expect = 3e-29
 Identities = 80/235 (34%), Positives = 108/235 (45%), Gaps = 4/235 (1%)

Query: 7   VLPGLKPVLELLASDPARIDTVFIRRGRRTPDTDRLMDLCREMRVRFSLVEGQVLDKLYA 66
           VL G   V   L + P  I  ++    RR     + +D  RE   R    +G  + KL  
Sbjct: 6   VLFGFHAVGVRLKTAPQSIIEIYYEPTRRDARMRQFLDKAREANARLIEADGLRIAKLAG 65

Query: 67  G-GHQGVVARLFEAGYVE-LDDLLQDA-PDAPLPLIIALDQVQDPGNAGTLARSLYALGG 123
             GHQGV AR+     V  LDDLL+   P    PL++ LD + DP N G   R     G 
Sbjct: 66  SHGHQGVAARVEAVAQVRSLDDLLEQLEPTGIPPLLLVLDGITDPHNLGACLRVADGAGA 125

Query: 124 AGLIVPRHNAAYLGAGAHRAAAGALEKLPVARVANLARALDEAAEAGYAIYGAMCGEGSV 183
             +I P+ +AA + A   + A+GA E +P   V NLAR L E  E    + G    +   
Sbjct: 126 HAVIAPKDHAAGINATVAKVASGAAETMPYFMVTNLARTLGELKERNIWVIGT-SDDAPK 184

Query: 184 NAFTATLRTPCVLVLGNEDKGIRPNVAKRCDTLLHIPMLRDFDSFNVAQAGALLL 238
             +   L+ P  LVLG E  G+R    K CD L+ IPM    +S NV+ A  + L
Sbjct: 185 TLYQVDLKGPVALVLGAEGAGMRQLTRKTCDELVSIPMAGAVESLNVSVASGVCL 239