Pairwise Alignments

Query, 249 a.a., RNA methyltransferase, TrmH family, group 3 (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 243 a.a., 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB from Pectobacterium carotovorum WPP14

 Score =  110 bits (275), Expect = 3e-29
 Identities = 79/236 (33%), Positives = 112/236 (47%), Gaps = 8/236 (3%)

Query: 7   VLPGLKPVLELLASDPARIDTVFIRRGRRTPDTDRLMDLCREMRVRFSLVE---GQVLDK 63
           ++ G+  V  LL  DP R   VF+ +GR   D  RL  +  E+     +++    Q LDK
Sbjct: 4   IIYGIHAVKALLERDPQRFLEVFVLKGR---DDRRLQPVIAELEAHGIVIQVANRQWLDK 60

Query: 64  LYAGG-HQGVVARLFEAGYVELDDLLQDAPDAPLPLIIALDQVQDPGNAGTLARSLYALG 122
                 HQG+VA++ E    + +DL     +   P ++ LD V DP N G   R+    G
Sbjct: 61  QAEDAVHQGIVAKVKEGRKYQENDLPAMLDNLETPFLLILDGVTDPHNLGACLRNADGAG 120

Query: 123 GAGLIVPRHNAAYLGAGAHRAAAGALEKLPVARVANLARALDEAAEAGYAIYGAMCGEGS 182
              +IVPR  +A L A   + A GA E +PV  V NLAR +    E    I G   GE  
Sbjct: 121 VHAVIVPRDRSAQLNATVKKVACGAAETVPVISVTNLARTMRLLQERNIWIVGT-AGEAD 179

Query: 183 VNAFTATLRTPCVLVLGNEDKGIRPNVAKRCDTLLHIPMLRDFDSFNVAQAGALLL 238
              + + L  P  LV+G E +G+R    + CD L+ IPM     S NV+ A  + L
Sbjct: 180 HTLYQSKLTGPLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCL 235