Pairwise Alignments

Query, 249 a.a., RNA methyltransferase, TrmH family, group 3 (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 243 a.a., 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB from Serratia liquefaciens MT49

 Score =  122 bits (305), Expect = 9e-33
 Identities = 85/236 (36%), Positives = 115/236 (48%), Gaps = 8/236 (3%)

Query: 7   VLPGLKPVLELLASDPARIDTVFIRRGRRTPDTDRLMDLCREMR---VRFSLVEGQVLDK 63
           ++ G+  V  LL +DP R   VFI +GR   D  RL  L  E+    +   +   Q LD+
Sbjct: 4   IIYGIHAVKALLDNDPQRFLEVFILKGR---DDRRLQPLIAELEATGIVIQVANRQWLDE 60

Query: 64  LYAGG-HQGVVARLFEAGYVELDDLLQDAPDAPLPLIIALDQVQDPGNAGTLARSLYALG 122
              G  HQG++AR+ E    + +DL         P ++ LD V DP N G   RS  A G
Sbjct: 61  KVEGAVHQGIIARVREGRQYQENDLPALLESVDTPFLLVLDGVTDPHNLGACLRSADAAG 120

Query: 123 GAGLIVPRHNAAYLGAGAHRAAAGALEKLPVARVANLARALDEAAEAGYAIYGAMCGEGS 182
              +IVPR  +A L A A + A GA E +P+ RV NLAR L    E    I G   GE  
Sbjct: 121 VHAVIVPRDRSAQLNATAKKVACGAAENVPLIRVTNLARTLRLLQEMNVWIVGT-AGEAD 179

Query: 183 VNAFTATLRTPCVLVLGNEDKGIRPNVAKRCDTLLHIPMLRDFDSFNVAQAGALLL 238
              F + +  P  LV+G E +G+R    + CD L+ IPM     S NV+ A  + L
Sbjct: 180 HTLFQSKMTGPMALVMGAEGEGMRRLTREHCDELISIPMAGTVSSLNVSVATGICL 235