Pairwise Alignments

Query, 760 a.a., DNA topoisomerase I (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 827 a.a., DNA topoisomerase I from Rhodanobacter sp000427505 FW510-R12

 Score =  484 bits (1247), Expect = e-141
 Identities = 283/630 (44%), Positives = 383/630 (60%), Gaps = 39/630 (6%)

Query: 1   MGKDLIIVESPAKVKTIKKFLGGKYVVQASVGHVRDLPTNEIGVDEANNFAPQYRVIDGK 60
           M K+L+IVESPAK KTI K+LG  + V AS GHVRDL   E  VD  + FA  Y VI+  
Sbjct: 1   MAKNLLIVESPAKAKTINKYLGKDFQVLASYGHVRDLKPKEGAVDTEHGFAMAYEVIERN 60

Query: 61  QKVVDTLREAAAKADTVYLAPDPDREGEAIAWHVAALIEG----KADNIKRIQFNEITAR 116
           +K VD + +AA  AD +YLA D DREGEAI+WH++ +++     K   + R+ F+EIT +
Sbjct: 61  EKHVDAIAKAAKLADDIYLATDLDREGEAISWHISEILKQRGLVKGKQMHRVVFSEITPK 120

Query: 117 AVREALENPRDLNRALFDAQQARRVLDRLVGYKLSPLLWKKVKRGISAGRVQSVALRLIV 176
           A++ A+  PR L+  L DAQQARR LD LVG+ LSP+LW+KV+RG+SAGRVQS ALR+IV
Sbjct: 121 AIKAAVAAPRQLSHDLVDAQQARRALDYLVGFNLSPVLWRKVQRGLSAGRVQSPALRMIV 180

Query: 177 DRESERRAFTPEEYWLFRAMFAKNVPGATPTSPDPQYAPFKAELAKIDGKK------AHV 230
           +RE E  AF   EYW   A   K+  G            F A L++++GKK         
Sbjct: 181 EREEEIEAFKAREYWTIEAQL-KHAEG-----------DFTARLSRLNGKKFEQFDLTSE 228

Query: 231 ADADAA-NALEDAMRGKPFVITAVERKKRERQPQPPFITSTLQQAANQRLGYSAKRTMNI 289
           ADA AA +AL+ A RG+   ++ V  K+R+R+P  PF TSTLQQ A ++LG++  RTM +
Sbjct: 229 ADALAARDALKQAARGR-LTVSEVSSKERKRRPAAPFTTSTLQQEAARKLGFTTSRTMKV 287

Query: 290 AQRLYEGVELGEMGTVALITYMRTDSVRVSDEARDAARAFVTETWGADFCPAKPRQFKTK 349
           AQ LYEGV LG  G V LITYMRTDS  + D+A    R  +   +G+   P  P+ +KTK
Sbjct: 288 AQGLYEGVALGSEGNVGLITYMRTDSTMLGDDAVAELRQLIARDFGSQALPDAPQMYKTK 347

Query: 350 G-SAQDAHEAVRPVDVNVTPDSVKHLLPPDQFQLYRLVWSRFVASQMAPARFDDTTV--- 405
             +AQ+AHEA+RP     TP SV   L  DQ +LY L+W R VA QM  A  +  T    
Sbjct: 348 SKNAQEAHEAIRPTSAMHTPKSVASFLNDDQRKLYELIWKRTVACQMIHATLNTVTAEFA 407

Query: 406 --AIACGPAEWRAKGERMLFPGFLAAMPQ-KEEGDAE-------LPPLQEGETLHPVSVE 455
              +A G A +RA G  ++ PGFLA   + +++  AE       LP L   E +    + 
Sbjct: 408 VRGVAGGDAAFRASGTTVVDPGFLAVYEEGRDQKGAEDDDEGRRLPRLAVDEQVPLHDIA 467

Query: 456 KEQKFTQPPARYTEASLVRELEERGIGRPSTYASIISTLIDRDYTRLEDKHFVPTDLGAT 515
            +Q FT+PP RY+EASLV+ LEE GIGRPSTYASII  L +R+Y  L+ + F P+D+G  
Sbjct: 468 ADQHFTEPPPRYSEASLVKTLEEYGIGRPSTYASIIQVLQNREYVFLDSRRFKPSDVGRA 527

Query: 516 VCDLLARHFTTLMDVGFTAQMEDSLDKVAEGGLDWVELLSRFSADFNPTLESAAKAMETV 575
           V   L +HFT  +D  FTA+MED LD V+ G   W+ L+ RF   F   ++   ++++  
Sbjct: 528 VSKFLTQHFTRYVDYDFTAKMEDELDAVSRGEEAWMPLMERFWQPFKQQVDEKTESVDRS 587

Query: 576 KG-GLPTDVTCPECGKPVVVKFGKAGPFLA 604
           +  G     + P+ GKPV V+ G+ GP+ A
Sbjct: 588 EATGARELGSDPKSGKPVSVRLGRFGPYAA 617